SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene19853

Length: 488 nt

UniGene Fasta

>biog2_v2.0_unigene19853
ATGGGGCAGTCCCTCTGTTTATAATCTGGTGGTGAATGAAGTACAGCGAACCGGTAGCCTATCTTATGGTTTTTACGTTTCCAATTCTGTTGTGTTCTGTTCTTTTGGAATTATAGAAGGGTTCTCAAGCCCATATATCCCGGAGAGGTTAAATTTCATCCGAAGAAGAACATGGAGTCGCCCTTCAAGGAAACGGTGTTGAAGGGAAAGACGGCTCTGGTAACAGGAGGAGGCTCAGGAATAGGGTTTGCAATAAGCACAGAATTAGGGAAGCATGGTGCTGCCATTGCTATCATGGGCCGTAGAAAGACCGTCGTCGAGGAAGCTACTGCAGCGCTCCAAGCGCAAGGCATTCGGGCCATTGGAATTGAAGGAGATGTTCGCAAGATAGAGGATGCTGCTCGTGTTGTTGAAGTAACAGTAAAGCAGTTTGGAAGACTTGATATTCTTGTGAATGGTGCTGCGGGCAATTTTCTTTGTGCTGCAGA

Ace file of the UniGene biog2_v2.0_unigene19853

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27550	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	peroxisomal 2,4-dienoyl-CoA reductase [Arabidopsis thaliana] sp\|Q9LTV6.1\|DECR2_ARATH RecName: Full=Peroxisomal 2,4-dienoyl-CoA reductase dbj\|BAB02424.1\| oxidoreductase, short-chain dehydrogenase/reductase family-like protein [Arabidopsis thaliana] gb\|AAL6	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	peroxisomal -dienoyl- reductase	-	-	83%

Source	GOs	Term	Type	e value	Identity
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	0.0	83%
Blast2go	peroxisome	GO:0005777	Cellular Component	0.0	83%

Source	InterPros	Term	Type	Identity
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUB3

Fln msg: Distance to subject end: 190 aas, your sequence is shorter than subject: 105 - 296

Fln protein: MESPFKETVLKGKTALVTGGGSGIGFAISTELGKHGAAIAIMGRRKTVVEEATAALQAQGIRAIGIEGDVRKIEDAARVVEVTVKQFGRLDILVNGAAGNFLCAA

Protein Length: 106

Fln nts: ATGGGGCAGTCCCTCTGTTTATAATCTGGTGGTGAATGAAGTACAGCGAACCGGTAGCCTATCTTATGGTTTTTACGTTTCCAATTCTGTTGTGTTCTGTTCTTTTGGAATTATAGAAGGGTTCTCAAGCCCATATATCCCGGAGAGGTTAAATTTCATCCGAAGAAGAAC_-_ATGGAGTCGCCCTTCAAGGAAACGGTGTTGAAGGGAAAGACGGCTCTGGTAACAGGAGGAGGCTCAGGAATAGGGTTTGCAATAAGCACAGAATTAGGGAAGCATGGTGCTGCCATTGCTATCATGGGCCGTAGAAAGACCGTCGTCGAGGAAGCTACTGCAGCGCTCCAAGCGCAAGGCATTCGGGCCATTGGAATTGAAGGAGATGTTCGCAAGATAGAGGATGCTGCTCGTGTTGTTGAAGTAACAGTAAAGCAGTTTGGAAGACTTGATATTCTTGTGAATGGTGCTGCGGGCAATTTTCTTTGTGCTGCAGA

Fln Alignment:

biogeco2_mira_rep_c21958___MESPFKETVLKGKTALVTGGGSGIGFAISTELGKHGAAIAIMGRRKTVVEEATAALQAQGIRAIGIEGDVRKIEDAARVVEVTVKQFGRLDILVNGAAGNFLCAA
A9NUB3__________________MESPFKETVLKGKTALVTGGGSGIGFAISTELGKHGAAVAIMGRRKTVVQEAAAALQAQGIRAIGVEGDVRNIEDAARVVELTVKQLGRLDILVNGAAGNFLSSA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain