SustainPineDB

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Assembly info
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene19819

Length: 390 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene19819
ACTGTCTCGAGCACGGCATCCAGCCTGATGGACAAATGCCGAGTGACAAGACCGTTGGCGGTGGAGATGATGCATTCAACACATTTTTCAGTGAGACAGGTGCCGGTAAGCATGTTCCTCGTGCCGTGTTTCTGGATCTGGAGCCAACTGTCATTGATGAAGTTCGAACCGGCACATATCGGCAGCTTTTTCACCCAGAGCAGCTGTCAGTAGCTGAGATCACCAACAGTGCCTTCGAGCCATCGTCCATGATGGCTAATGCGATCCGCGCCATGGCAATACATGGCTTGCTGTCTCATGTACCGAGGGATGTTGTGCCCAAGGACGTGAACGCGGCAGTAGCCACCATTAAGACCAAGAGGACCATTCAGTTCGTGGATTGGTGTCCCA

Ace file of the UniGene biog2_v2.0_unigene19819 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16394	1/2
SustainPine v2.0	sp_v2.0_unigene83167	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	Tubulin alpha-2/alpha-4 chain n=384 Tax=Eukaryota RepID=TBA2_ARATH	-	-	94%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	alpha tubulin 1	-	-	99%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PRI6

Fln msg: Distance to subject end: 166 aas, your sequence is shorter than subject: 129 - 319

Fln protein: CLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLSVAEITNSAFEPSSMMANAIRAMAIHGLLSHVPRDVVPKDVNAAVATIKTKRTIQFVDWCP

Protein Length: 130

Fln nts: ACTGTCTCGAGCACGGCATCCAGCCTGATGGACAAATGCCGAGTGACAAGACCGTTGGCGGTGGAGATGATGCATTCAACACATTTTTCAGTGAGACAGGTGCCGGTAAGCATGTTCCTCGTGCCGTGTTTCTGGATCTGGAGCCAACTGTCATTGATGAAGTTCGAACCGGCACATATCGGCAGCTTTTTCACCCAGAGCAGCTGTCAGTAGCTGAGATCACCAACAGTGCCTTCGAGCCATCGTCCATGATGGCTAATGCGATCCGCGCCATGGCAATACATGGCTTGCTGTCTCATGTACCGAGGGATGTTGTGCCCAAGGACGTGAACGCGGCAGTAGCCACCATTAAGACCAAGAGGACCATTCAGTTCGTGGATTGGTGTCCCA

Fln Alignment:

biogeco2_mira_rep_c21756___CLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQL
C0PRI6__________________CLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain