SustainPineDB

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Assembly info
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ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene19809

Length: 419 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene19809
ATGACAAGCGTACGCTGCCTGCGGACTGGAAGTTTGGAGTGAAGCTTCAAAACGTTATGGAAGAATCCATTTACAAGTACATGCTGGAAACATTCACCCGCCATCGGGAGGACGAGGCGTCCAAGGAGCTCTGGGAACGGACATGGAACCTGACACAGAGGTGGTAGCTGTTGATCCAGGAGATGACCCCAAATTTGGCTGGCCCTGCTTCGTTAAGGCTGGAGTTGCAGACAAGGTGGAGATCAAGAAAACCACAGGGTTGGACTATTTGGATTCCCTTATTCAAAAGGGGAGAAGGATTGCTTCGACTTTGCATTCGTGGACGCCGACAAAGTGAACTACGTGAACTATCATCCACGGCTGATGAAGTTAGTGCGCGTGGGGGGTGTCATAATTTACGACGACACCCTCTGGTTTGG

Ace file of the UniGene biog2_v2.0_unigene19809 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15656	1/2
SustainPine v2.0	sp_v2.0_unigene24063	1/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Caffeoyl-CoA O-methyltransferase (Fragment) n=1 Tax=Plantago major RepID=Q2YHM9_PLAMJ	-	-	2.8026e-45	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Blast2go	caffeoyl 3-o-methyltransferase	-	-	0.0	66%

Source	InterPros	Term	Type	e value	Identity
Sma3	O-methyltransferase, family 3	IPR002935	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NT68

Fln msg: Warning!, your query overlaps and the subject is separated, and overlapping frame ERROR between 298 and 286, Distance to subject end: 54 aas, your sequence is shorter than subject: 139 - 281

Fln protein: DKRTLPADWKFGVKLQNVMEESIYKYMLETFTRHREDEASKELWERTWNxxxxxVAVDPGDDPKFGWPCFVKAGVADKVEIKKTTGLDYLDSLxxxxxxxCFDFAFVDADKVNYVNYHPRLMKLVRVGGVIIYDDTLWF

Protein Length: 140

Fln nts: ATGACAAGCGTACGCTGCCTGCGGACTGGAAGTTTGGAGTGAAGCTTCAAAACGTTATGGAAGAATCCATTTACAAGTACATGCTGGAAACATTCACCCGCCATCGGGAGGACGAGGCGTCCAAGGAGCTCTGGGAACGGACATGGAACxxxxxxxxxxxxxxxGTAGCTGTTGATCCAGGAGATGACCCCAAATTTGGCTGGCCCTGCTTCGTTAAGGCTGGAGTTGCAGACAAGGTGGAGATCAAGAAAACCACAGGGTTGGACTATTTGGATTCCCTTATxxxxxxxxxxxxxxxxxxTTGCTTCGACTTTGCATTCGTGGACGCCGACAAAGTGAACTACGTGAACTATCATCCACGGCTGATGAAGTTAGTGCGCGTGGGGGGTGTCATAATTTACGACGACACCCTCTGGTTTGG

Fln Alignment:

biogeco2_mira_rep_c21731___DKRTLPADWKFGVKLQNVMEESIYKYMLETFTRHREDEASKELWERTWNLTQRxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxDTEVVAVDPGDDPKFGWPCFVKAGVADKVEIKKTTGLDYLDSLIQxxxxDCFDFAFVDADKVNYVNYHPRLMKLVRVGGVIIYDDTLWF
A9NT68__________________DNRTLPPDWKFGVKLQNVMEESIYKYMLETFTRHREHEASKELWERTWKLTQRxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxDGKVVAVDPGEDPKFGWPCFVKAGVADKVEIKQTTGLEYLDSVVExxxxDCFDFAFVDADKVNYVNYHPRLMKLVRVGGVIIYDDTLWF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain