SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene19681

Length: 932 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene19681 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15732	38/40
SustainPine v2.0	sp_v2.0_unigene60443	2/40

Source	Descriptions	Term	Type	Identity
AutoFact	ADP-ribosylation factor [Medicago sativa] emb\|CAI29265.1\| ADP-ribosylation factor 1 [Medicago truncatula]	-	-	99%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Blast2go	adp-ribosylation factor	-	-	99%

Source	GOs	Term	Type	Identity
Blast2go	protein ADP-ribosylation	GO:0006471	Biological Process	99%
Blast2go	vesicle-mediated transport	GO:0016192	Biological Process	99%
Blast2go	intracellular protein transport	GO:0006886	Biological Process	99%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	99%
Blast2go	intracellular membrane-bounded organelle	GO:0043231	Cellular Component	99%
Blast2go	cytoplasmic part	GO:0044444	Cellular Component	99%

Full-Lengther Next Prediction

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
340		11		88	0.991528
359	88		11		0.991528
395	88		11		0.991528
677	90		10		0.90298
795		50		50	1.0
796		50	50		1.0
797		50	50		1.0
800	80		20		0.995495
928		66	33		0.997476
929		66	33		0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain