SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene19677

Length: 1202 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene19677 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5432	1/57
SustainPine v2.0	sp_v2.0_unigene15309	1/57
SustainPine v2.0	sp_v2.0_unigene15667	52/57
SustainPine v2.0	sp_v2.0_unigene30742	2/57
SustainPine v2.0	sp_v2.0_unigene80004	1/57

Source	Descriptions	Term	Type	Identity
AutoFact	Xyloglucan endotransglucosylase/hydrolase protein 9, putative n=1 Tax=Ricinus communis RepID=B9S9N2_RICCO	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	xyloglucan endotransglucosylase hydrolase protein 9	-	-	77%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 16	IPR000757	-	-
Sma3	Glycoside hydrolase, family 16, active site	IPR008263	-	-
Sma3	Beta-glucanase	IPR008264	-	-
Sma3	Xyloglucan endo-transglycosylase, C-terminal	IPR010713	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Xyloglucan endotransglucosylase/hydrolase	IPR016455	-	-
Sma3	Carbohydrate kinase, FGGY, conserved site	IPR018483	-	-
Sma3	DNA topoisomerase, type IIA, conserved site	IPR018522	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9T0

Fln msg:

Fln protein: MGLVGRMMHWPCVLGSIVVLCSLIVGSQCAAFNDFFYPSWALDHVMYEGELLKLRLDNTSGAGFASKSTYIFGKVNVQIKLVPDDSAGTVTAFYMSSQGDQHDEFDFEFLGNTSGEPYAVQTNVYSKGVGKREQRIFLWFDPTTDFHSYSFLWNRQQVVFLVDDVPIRLFQNNEKVGVPYPQTQPMGVYSSIWNADDWATQGGLVKTDWSHAPFVSTYTNFSIDACDYSLKTTCSSWWDEPAYASLDAKQRLKLKWVQEKYMTYDYCKDSARFPTPPPECSA*

Protein Length: 284

Fln nts: ATGGGGATTGTGGAGCTCTCGTTTTAGATCTTTGCTACACACTCTTCTGTTCTCTTCAGTTCAGTCTTCAGG_-_ATGGGATTGGTAGGTCGTATGATGCACTGGCCCTGTGTTCTCGGTAGCATTGTAGTGTTGTGCAGCCTGATAGTGGGCTCTCAATGTGCAGCCTTCAATGATTTCTTCTACCCCAGTTGGGCTCTTGACCATGTTATGTACGAAGGGGAGTTGCTCAAACTTAGGCTCGACAACACTTCTGGTGCAGGGTTTGCTTCCAAGAGCACATACATATTCGGAAAAGTGAATGTGCAGATTAAGCTCGTTCCTGACGACTCTGCTGGCACCGTTACTGCTTTCTATATGTCTTCCCAAGGCGATCAGCATGACGAATTCGACTTTGAATTTTTGGGGAACACTTCTGGGGAGCCGTACGCTGTGCAGACGAATGTTTATTCTAAGGGGGTTGGCAAGCGCGAGCAGCGGATTTTCTTATGGTTCGACCCAACCACGGATTTCCATTCCTATTCCTTTCTCTGGAACCGCCAGCAAGTTGTTTTCTTGGTGGACGATGTGCCCATACGGCTATTTCAGAACAATGAGAAAGTGGGAGTCCCGTATCCTCAAACTCAACCCATGGGCGTCTACTCCTCAATATGGAACGCAGACGACTGGGCTACTCAAGGTGGCCTCGTCAAGACCGATTGGAGCCACGCGCCTTTCGTTTCCACATACACAAATTTCAGCATTGATGCCTGTGATTATTCCTTGAAAACGACCTGCTCTTCGTGGTGGGATGAGCCTGCTTACGCTTCGCTCGATGCAAAGCAGAGGCTGAAACTGAAGTGGGTGCAAGAGAAATACATGACTTACGATTACTGCAAAGATTCAGCCAGGTTTCCCACGCCTCCACCAGAATGTAGTGCTTGA___AGTGGGGTCTCTTAGCTTGAACTCACAGAAAGATCTCATTATCACATATTTCATTCTCCCTTTATGAGGTTACCACATTTCTGTCAGCTTGGATGGTGGAAATTACTGCCGGAGGACACGAAAGTTTATGTTTTTGTGGCGGTGGAAAAGAGAGAACAGGGCCTCTCTGTCTCTCAGCCTTTGCATCGTCACTGAAGAATTTTGAAGTGCCGACCAGGGCACAAAGGGACTTGTAAAGTGCCATCCACGACACAATATTTACCTATTTTGAGGGCATTTCG

Fln Alignment:

biogeco2_mira_rep_c21063___MGLVGR-----MMHWPCVLGSIVVLCSLIVGSQCAAFNDFFYPSWALDHVMYEGELLKLRLDNTSGAGFASKSTYIFGKVNVQIKLVPDDSAGTVTAFYMSSQGDQHDEFDFEFLGNTSGEPYAVQTNVYSKGVGKREQRIFLWFDPTTDFHSYSFLWNRQQVVFLVDDVPIRLFQNNEKVGVPYPQTQPMGVYSSIWNADDWATQGGLVKTDWSHAPFVSTYTNFSIDACDYSLKTTCSSWWDEPAYASLDAKQRLKLKWVQEKYMTYDYCKDSARFPTPPPECS
D5A9T0__________________MGLVGREEGGRIMHWPCVLSSIVMLCSLVVGSQCAAFNDFFYPSWALDHVMYEGELLKLRLDNTSGAGFASKSTYIFGKVNVQIKLVPGDSAGTVTAFYMSSQGDQHDEFDFEFLGNTSGEPYAVQTNVFSKGVGKREQRIFLWFDPTADFHSYSFLWNRQQVVFFVDDVPIRVFLNNEKVGVPYPQTQPMGVYSSIWNADDWATQGGLVKTDWSHAPFVSTYKNFSIDACEYPSTTSCSSWWDQPAYASLDAKQRLKLKWVQEKYMTYDYCRDSGRFATPPAECA

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
690	87		12		0.992554
700	87			12	0.992554
747		87		12	0.992554
748		87	12		0.992554
781		87		12	0.992554
1173			76	23	1.0
1189	10		90		0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain