SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene19658

Length: 405 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene19658
ATATTTATGATGGCATGACTGGTATCAGATCGTCTGATCAATATGATCTCTTGTTTGTCGGAAATGTTTAACCTCGTGATTAAGTAATTGTTCATTTAGATGTATTTATGTAATCTAAAGGGCTATGCTCTACTTAGTAGCTATTATGTTCTTACCATGCAGAGCAAGTATGCCCCTTTTAATTCCATTTAGTATCTTGGTTACCATGTTGTGAATTTCCCAGATTATGAGATATGGCAGCCATGGCGCTTCCCAGTCAAGCTCTTTCCCAAGTTTCCTGTGTTTCAGCTGCCCCAGAACAAGGATTAGTCTATCCCAAAGAAATTCTGTGTGCTTGAGGCCATTTCGAAGTATCACCAAGGCATTTGGTCTGAAGTTAACAGAGGCGCGTTGCACAATGGTAGT

Ace file of the UniGene biog2_v2.0_unigene19658 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene50623	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	heterotrophic ferredoxin 2 [Helianthus annuus]	-	-	3.0e-20	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	62%
Blast2go	ferredoxin- chloroplast	-	-	0.0	74%

Source	InterPros	Term	Type	Identity
Sma3	2Fe-2S ferredoxin-type domain	IPR001041	-	-
Sma3	2Fe-2S ferredoxin, iron-sulphur binding site	IPR006058	-	-
Sma3	Ferredoxin [2Fe-2S], plant	IPR010241	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Beta-grasp domain	IPR012675	-	-
Sma3	Syntaxin 6, N-terminal	IPR015260	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NKP9

Fln msg: Overlapping hits, possible frame ERROR between 320 and 293, Distance to subject end: 95 aas, your sequence is shorter than subject: 57 - 153

Fln protein: MAAMALPSQALSQVSCVSAxxxxxxxxxxxNSVCLRPFRSITKAFGLKLTEARCTMV

Protein Length: 58

Fln nts: ATATTTATGATGGCATGACTGGTATCAGATCGTCTGATCAATATGATCTCTTGTTTGTCGGAAATGTTTAACCTCGTGATTAAGTAATTGTTCATTTAGATGTATTTATGTAATCTAAAGGGCTATGCTCTACTTAGTAGCTATTATGTTCTTACCATGCAGAGCAAGTATGCCCCTTTTAATTCCATTTAGTATCTTGGTTACCATGTTGTGAATTTCCCAGATTATGAGAT_-_ATGGCAGCCATGGCGCTTCCCAGTCAAGCTCTTTCCCAAGTTTCCTGTGTTTCAGCTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAATTCTGTGTGCTTGAGGCCATTTCGAAGTATCACCAAGGCATTTGGTCTGAAGTTAACAGAGGCGCGTTGCACAATGGTAGT

Fln Alignment:

biogeco2_mira_rep_c21015___MAAMALPSQALSQVSCVSAAxxxxxxxxxRNSVCLRPFRSITKAFGLKLTEARCTM
A9NKP9__________________MAAMRLSSPALFQVSCVSAAxxxxxxxxxRSSVCLRPFGSITKVFGLKATEARFTM

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain