SustainPineDB

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Assembly info
Unigenes
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SSRs
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GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene19641

Length: 287 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene19641
TGACCAGCAGAGGCTTATCTTTGCCGGTAAGCAACTTGAAGATGGCCGGACTTTGGCTGATTACAATATTCAGAAGGAATCGACCCTGCACCTTGTGCTTCGTCTGAGAGGTGGCATGCAGATTTTTGTGAAAACTCTTACTGGGAAAACCATTACATTGGAGGTGGAGAGTTCAGATACGATTGATAATGTGAAGGCTAAGATTCAGGACAAGGAGGGTATCCCTCCGGACAGCAAAGGCTGATTTTTGCTGGTAAGCAGCTGGAAGATGGACGTACTCTGGCTGA

Ace file of the UniGene biog2_v2.0_unigene19641 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8185	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	polyubiquitin 4 [Arabidopsis thaliana] ref\|XP_002881273.1\| hypothetical protein ARALYDRAFT_482268 [Arabidopsis lyrata subsp. lyrata] sp\|P0CH32.1\|UBQ4_ARATH RecName: Full=Polyubiquitin 4; Contains: RecName: Full=Ubiquitin; Flags: Precursor emb\|CAA31331.1\|	-	-	99%
FL-Next	tr=Putative polyubiquitin; Picea abies (Norway spruce) (Picea excelsa).	-	-	97%
Blast2go	ubiquitin	-	-	99%

Source	GOs	Term	Type	Identity
Blast2go	protein ubiquitination involved in ubiquitin-dependent protein catabolic process	GO:0042787	Biological Process	99%
Blast2go	response to salicylic acid stimulus	GO:0009751	Biological Process	99%
Blast2go	aging	GO:0007568	Biological Process	99%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	99%
Blast2go	nucleus	GO:0005634	Cellular Component	99%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ubiquitin	IPR000626	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: Q7FPA4

Fln msg: ERROR#3, very serious frame error, Overlapping hits, possible frame ERROR between 238 and 217, STOP codon was not found. Distance to subject end: 0 aas, atg_distance in limit (1-15): atg_distance = 1, W2: There is no M at the beginning, your sequence is shorter than subject: 95 - 229

Fln protein: DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKxxxxxxxxxLIFAGKQLEDGRTLA

Protein Length: 96

Fln nts: TGACCAGCAGAGGCTTATCTTTGCCGGTAAGCAACTTGAAGATGGCCGGACTTTGGCTGATTACAATATTCAGAAGGAATCGACCCTGCACCTTGTGCTTCGTCTGAGAGGTGGCATGCAGATTTTTGTGAAAACTCTTACTGGGAAAACCATTACATTGGAGGTGGAGAGTTCAGATACGATTGATAATGTGAAGGCTAAGATTCAGGACAAGxxxxxxxxxxxxxxxxxxxxxxxxxxxCTGATTTTTGCTGGTAAGCAGCTGGAAGATGGACGTACTCTGGCTGA___

Fln Alignment:

biogeco2_mira_rep_c20941___xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Q7FPA4__________________xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain