SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene19639

Length: 341 nt

UniGene Fasta

>biog2_v2.0_unigene19639
ATGGGCCCATTGAAGTGACTTTGAAGTGACGGTATGCCTCCCAACACAATGTGGCCTCACCCTCAGAACTCGATTCTGTTTCTTTGCATCCCTGGAATTCAAATCATCTACAGTCCCAGAAATCTTGACACGACGTAAGAGGTTTCAAATGCTGTGGACCATGTGCAATCAGGGATTGTTGATCTTCAAAAGGCCAAGACTTTACAGCGGAATTCAACGAAGTGGATGTGCATTGCCATCATAATTCTTTTAATAATTTTAGCCGTAGCTGTTGTTGGAGTTGTTAAGCCATGGCAAACCAAACAATCTTAATAAGTTAAGTTTGGAGAACTAGTTTGGTT

Ace file of the UniGene biog2_v2.0_unigene19639

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene64659	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Syntaxin-132 n=3 Tax=Arabidopsis RepID=SY132_ARATH	-	-	1.0e-07	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%
Blast2go	uncharacterized protein loc100527540	-	-	4.46572e-13	84%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	4.46572e-13	84%
Blast2go	plasma membrane	GO:0005886	Cellular Component	4.46572e-13	84%

Source	InterPros	Term	Type	Identity
Sma3	Target SNARE coiled-coil domain	IPR000727	-	-
Sma3	Syntaxin, N-terminal	IPR006011	-	-
Sma3	Syntaxin/epimorphin, conserved site	IPR006012	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A8B0

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 104 - 308

Fln protein: MGPLK*L*SDGMPPNTMWPHPQNSILFLCIPGIQIIYSPRNLDTT*EVSNAVDHVQSGIVDLQKAKTLQRNSTKWMCIAIIILLIILAVAVVGVVKPWQTKQS*

Protein Length: 105

Fln nts: ATGGGCCCATTGAAGTGACTTTGAAGTGACGGTATGCCTCCCAACACAATGTGGCCTCACCCTCAGAACTCGATTCTGTTTCTTTGCATCCCTGGAATTCAAATCATCTACAGTCCCAGAAATCTTGACACGACGTAAGAGGTTTCAAATGCTGTGGACCATGTGCAATCAGGGATTGTTGATCTTCAAAAGGCCAAGACTTTACAGCGGAATTCAACGAAGTGGATGTGCATTGCCATCATAATTCTTTTAATAATTTTAGCCGTAGCTGTTGTTGGAGTTGTTAAGCCATGGCAAACCAAACAATCTTAA___TAAGTTAAGTTTGGAGAACTAGTTTGGTT

Fln Alignment:

biogeco2_mira_rep_c20936___NLDTT*EVSNAVDHVQSGIVDLQKAKTLQRNSTKWMCXXXXXXXXXXXXXXXGVVKPWQTKQS
D5A8B0__________________NIET--QVSNAVDHVQSGTVALQKAKTLQRNSRKWMCIAIIILLIIVAVIVVGVVKPWQSKQA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain