SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene19615

Length: 564 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene19615
CTGTCTTGCTTTCTCTGCTAATTTTGCAGCTATGACCGGGACCTCATCAGAACAGTATTCCTCGGTCCACGACCTCACAGTCAAGGACATTAGGGGTAATGACGTGGATCTCAGCATCTATAGAGGCAAGGTTTTGATCATCGTCAATGTTGCTCTCAATGTGGGTTGACTACCTCTAACTATACTGAGCTAAATGAACTGTATGCAAGTACAAGGATCAAGGATTAGAAATACTGGCTTTCCCATGCAATCAGTTTGGTGGACAGGAACCAGGTGATAATGAACAAATTGCAGAAGTAGCATGCACTCGTTTTAAAGCAGAGTTTCCCATATTTGACAAGGTGGAAGTTAATGGGAGCAGTGCAGCTCCTGTTTACAAGTACTTGAAGTCCAGTAAAGGTGGGATTTTTTGGAGAAGACATAAAGTGGAACTTCACTAAGTTTCTGGTGGACAAAGATGGAAATGTTGTTGAACGATATGCGCCAACTACGTCTCCATTGAGCATTGAGAAAGACGTGAAGAAGTTGTTAGGAAATTGCTTGATTCTGTTAAGAAACAACATA

Ace file of the UniGene biog2_v2.0_unigene19615 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene61275	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	Glutathione peroxidase (Fragment) n=20 Tax=Picea sitchensis RepID=E5F5S9_PICSI	-	-	81%
FL-Next	sp=Glutathione peroxidase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	74%
Blast2go	glutathione peroxidase-like protein	-	-	88%

Source	InterPros	Term	Type	Identity
Sma3	C2 calcium-dependent membrane targeting	IPR000008	-	-
Sma3	PWWP	IPR000313	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Glutathione peroxidase	IPR000889	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	RNA polymerase II, large subunit, CTD	IPR006569	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3		IPR012335	-	-
Sma3	Phosphoribosyltransferase C-terminal	IPR013583	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	C2 membrane targeting protein	IPR018029	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NQB1

Fln msg: warning!, putative chimeric sequence! or repetitive structure STOP codon was not found. Distance to subject end: 8 aas, your sequence is shorter than subject: 188 - 246

Fln protein: CLAFSANFAAMTGTSSEQYSSVHDLTVKDIRGNDVDLSIYRGKVLIIVNVxxxxxxTTSNYTELNELYASTRIKD*KYWLSHAISLVDRNQVIMNKLQK*HALVLKQSFPYLTRWKLMGAVQLLFTST*SPVKVGFFGEDIKWNFTKFLVDKDGNVVERYAPTTSPLSIEKDVKKLLGNCLILLRNNI

Protein Length: 189

Fln nts: CTGTCTTGCTTTCTCTGCTAATTTTGCAGCTATGACCGGGACCTCATCAGAACAGTATTCCTCGGTCCACGACCTCACAGTCAAGGACATTAGGGGTAATGACGTGGATCTCAGCATCTATAGAGGCAAGGTTTTGATCATCGTCAATGTTxxxxxxxxxxxxxxxxxxACTACCTCTAACTATACTGAGCTAAATGAACTGTATGCAAGTACAAGGATCAAGGATTAGAAATACTGGCTTTCCCATGCAATCAGTTTGGTGGACAGGAACCAGGTGATAATGAACAAATTGCAGAAGTAGCATGCACTCGTTTTAAAGCAGAGTTTCCCATATTTGACAAGGTGGAAGTTAATGGGAGCAGTGCAGCTCCTGTTTACAAGTACTTGAAGTCCAGTAAAGGTGGGATTTTTTGGAGAAGACATAAAGTGGAACTTCACTAAGTTTCTGGTGGACAAAGATGGAAATGTTGTTGAACGATATGCGCCAACTACGTCTCCATTGAGCATTGAGAAAGACGTGAAGAAGTTGTTAGGAAATTGCTTGATTCTGTTAAGAAACAACATA

Fln Alignment:

biogeco2_mira_rep_c20857___LAFSANFAAMTGTSSEQYSSVHDLTVKDIRGNDVDLSIYRGKVLIIVNVAxxxxLTTSNYTELNELYASTRIKD*KYWLSHAISLVDRNQVIMNKLQK*HALVLKQSFPYLTRWKLMGAVQLLFTST*SPVKVGFFGEDIKWNFTKFLVDKDGNVVERYAPTTSPLSIEKDVKKLLG
A9NQB1__________________VGFSANFTAMTGSSSKQSTSVYDFTVKDIRGNDVDLSIYKGKVLLIVNVAxxxxLTNSNYNELNEVYTKYKDQGLEILAFPCNQFGEQEPGDNAQIAEVACTRFKAEFPIFDKVEVNGSNAAPIYKFLKSSKGGLLGNGIKWNFTKFLVDKDGNVVERYAPTTSPLSIEKNVKKLLG

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain