SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene19593

Length: 414 nt

UniGene Fasta

>biog2_v2.0_unigene19593
TCGGCTGCTTGATTTTTTTGTGCGCTTAACCGGGATTGTTTCCATTCTTTTGAGGGTTTTTTTCGAGGTTTGAAGGGTTTCAACCAGCGACAATGAGGGAGTGCATTTCGATCCACATTGGCCAGGCCGGTATTCAGGTCGGCAATGCCTGTTGGGAGCTTTACTGTCTCGAGCACGGCATCCAGCCTGATGGACAAATGCCGAGTGACAAGACCGTTGGCGGTGGAGATGATGCATTCAACACATTTTTCAGTGAGACAGGTGCCGGTAAGCATGTTCCTCGTGCCGTGTTTCTGGATCTGGAGAAGGACTACGAAGAGGTCGGAGCAGAGTCTGCCGAGGGAGACGAGGATGAGGGCGAAGAGTACTGATCGATTATTAATTGCTATACTAAATGCTAGCTGCTAGTATACA

Ace file of the UniGene biog2_v2.0_unigene19593

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene82807	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: tubulin alpha-1C chain-like n=1 Tax=Sus scrofa RepID=UPI0001E87237	-	-	2.0e-36	89%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	98%
Blast2go	alpha tubulin	-	-	0.0	99%

Source	InterPros	Term	Type	Identity
Sma3	Tubulin	IPR000217	-	-
Sma3	Alpha tubulin	IPR002452	-	-
Sma3	Tubulin/FtsZ, GTPase domain	IPR003008	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-
Sma3	Tubulin/FtsZ, 2-layer sandwich domain	IPR018316	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PRI6

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 212 aas, your sequence is shorter than subject: 93 - 319

Fln protein: MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEKDYEEVGAESAEGDEDEGEEY*

Protein Length: 94

Fln nts: TCGGCTGCTTGATTTTTTTGTGCGCTTAACCGGGATTGTTTCCATTCTTTTGAGGGTTTTTTTCGAGGTTTGAAGGGTTTCAACCAGCGACA_-_ATGAGGGAGTGCATTTCGATCCACATTGGCCAGGCCGGTATTCAGGTCGGCAATGCCTGTTGGGAGCTTTACTGTCTCGAGCACGGCATCCAGCCTGATGGACAAATGCCGAGTGACAAGACCGTTGGCGGTGGAGATGATGCATTCAACACATTTTTCAGTGAGACAGGTGCCGGTAAGCATGTTCCTCGTGCCGTGTTTCTGGATCTGGAGAAGGACTACGAAGAGGTCGGAGCAGAGTCTGCCGAGGGAGACGAGGATGAGGGCGAAGAGTACTGATCGATTATTAATTGCTATACTAAATGCTAGCTGCTAGTATACA

Fln Alignment:

biogeco2_mira_rep_c20780___MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLE
C0PRI6__________________MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLE

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain