SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene19587

Length: 567 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene19587
ACATGGGGAAGCAGAGTTCACTCACTGAGCGGCATTTGCTTAGTAATTGTGAGGTAGGGTTTCTGGGTCGTCTTCTTGTTCAGACATAGATTTGTGCTTCAGGGAATAGAGATGGCTCCAGAGGTAACGGCCGAGGTATTGATCAACGCTGCTGGAGGTAAGGCGATGGCGGTGAGCGGCCTGCGTAGCGGATACTCGAAGAGAGCTTATGTGACGTTCTTGGCTGGAGCAGGCGACTACGTCAAGGGCGTTGTCGGCCTCGTAAAAGGCCTGCGCAAGGTTAATTCGGCGTATCCCCTCATCGTAGCCGTTCTTCCAGATGTTCCCGAGGACACATGCAGCTTCTGAGGAGTCAGGGTTGCATTGTCATGAAATTGAGCCCATCTATCCTCCGGAGAACCAGGTCCAGTTTGCCATGGCTTATTATGTCATCAATTATTCCAAGCTCCGGATATGGGAGGTATAATTTGAACTAACATCCATTCGTATTCTGATTTCCTTTTCTTGAATCTTTTATTTATTATTTCTTGAATCTTTTAGAGCAGAAATGTAAAGAACTCTTACATT

Ace file of the UniGene biog2_v2.0_unigene19587 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene13919	2/3

Source	Descriptions	Term	Type	Identity
AutoFact	Galactinol synthase n=1 Tax=Coffea arabica RepID=E0X627_COFAR	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	62%
Blast2go	galactinol synthase	-	-	84%

Source	ECs	Term	Type	e value	Identity
Blast2go	Inositol 3-alpha-galactosyltransferase.	EC:2.4.1.123	-	0.0	84%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Galactose metabolism	00052		0.0	84%

Source	GOs	Term	Type	e value	Identity
Blast2go	inositol 3-alpha-galactosyltransferase activity	GO:0047216	Molecular Function	0.0	84%

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycosyl transferase, family 8	IPR002495	-	0.0	-
Sma3	Intermediate filament protein, conserved site	IPR018039	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NQN6

Fln msg: Separated hits, possible frame ERROR between 333 and 356, Unexpected STOP codon at 3' end. Distance to subject end: 199 aas, your sequence is shorter than subject: 119 - 345

Fln protein: MAPEVTAEVLINAAGGKAMAVSGLRSGYSKRAYVTFLAGAGDYVKGVVGLVKGLRKVNSAYPLIVAVLPDVPExxxxxxxxxGLHCHEIEPIYPPENQVQFAMAYYVINYSKLRIWEV*

Protein Length: 120

Fln nts: ACATGGGGAAGCAGAGTTCACTCACTGAGCGGCATTTGCTTAGTAATTGTGAGGTAGGGTTTCTGGGTCGTCTTCTTGTTCAGACATAGATTTGTGCTTCAGGGAATAGAG_-_ATGGCTCCAGAGGTAACGGCCGAGGTATTGATCAACGCTGCTGGAGGTAAGGCGATGGCGGTGAGCGGCCTGCGTAGCGGATACTCGAAGAGAGCTTATGTGACGTTCTTGGCTGGAGCAGGCGACTACGTCAAGGGCGTTGTCGGCCTCGTAAAAGGCCTGCGCAAGGTTAATTCGGCGTATCCCCTCATCGTAGCCGTTCTTCCAGATGTTCCCGAGGAxxxxxxxxxxxxxxxxxxxxxxxxAGGGTTGCATTGTCATGAAATTGAGCCCATCTATCCTCCGGAGAACCAGGTCCAGTTTGCCATGGCTTATTATGTCATCAATTATTCCAAGCTCCGGATATGGGAGGTATAATTTGAACTAACATCCATTCGTATTCTGATTTCCTTTTCTTGAATCTTTTATTTATTATTTCTTGAATCTTTTAGAGCAGAAATGTAAAGAACTCTTACATT

Fln Alignment:

biogeco2_mira_rep_c20758___MAPEVTAEVLINAAGGKAMAVSGLRSGYSKRAYVTFLAGAGDYXXXXXXXXXXXXXVNSAYPLIVAVLPDVPEDxxxxxxxxGLHCHEIEPIYPPENQVQFAMAYYVINYSKLRIWE
A9NQN6__________________MNPEISPVDLL--FGAKAAAAKK-----NCRAYVTFLAGCGDYVKGVVGLAKGLRNVKSAYPLVVAVLADVPEDxxxxxxxxGCIVRQIQPIDPPDNEVQFSMPYYVLNYSKLRIWE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain