SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene19578

Length: 322 nt

UniGene Fasta

>biog2_v2.0_unigene19578
ACATGGGGACGTCTCTCCGATCGCTTGCTTGCTGTCTCAGCAAGCAATTAATCGTTGACGATGGAGGGAGTGGCATTCCAGCAGCAGGCGGTGCCAGAGCTCCTTGTAGGCTTCAGATTTCATCCCACCGATGAGGAACTCATCACCCATTACCTGGAGAAGAAGGTATCCTCCTCCCCTCTGCCTGCCCCAATTATTGCAGACATTGATCCCTACCAGCAGGACCGGAGCGGAGCGCGGCCAAACAGAGCCGCCGGCTCTGGCTACTGGAAAGCCACGGGATCAGACATACCCATTGTTAGTATGTCGGGAAGCGCGTCGC

Ace file of the UniGene biog2_v2.0_unigene19578

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene20787	2/3
SustainPine v2.0	sp_v2.0_unigene34065	1/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	NAC domain protein, IPR003441 n=1 Tax=Populus trichocarpa RepID=B9N9K1_POPTR	-	-	4.0e-16	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%
Blast2go	nac domain ipr003441	-	-	3.6629e-21	60%

Source	InterPros	Term	Type	e value	Identity
Sma3	No apical meristem (NAM) protein	IPR003441	-	0.0	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ABS0

Fln msg: Distance to subject end: 158 aas, your sequence is shorter than subject: 87 - 270

Fln protein: MEGVAFQQQAVPELLVGFRFHPTDEELITHYLEKKVSSSPLPAPIIADIDPYQQDRSGARPNRAAGSGYWKATGSDIPIVSMSGSAS

Protein Length: 88

Fln nts: ACATGGGGACGTCTCTCCGATCGCTTGCTTGCTGTCTCAGCAAGCAATTAATCGTTGACG_-_ATGGAGGGAGTGGCATTCCAGCAGCAGGCGGTGCCAGAGCTCCTTGTAGGCTTCAGATTTCATCCCACCGATGAGGAACTCATCACCCATTACCTGGAGAAGAAGGTATCCTCCTCCCCTCTGCCTGCCCCAATTATTGCAGACATTGATCCCTACCAGCAGGACCGGAGCGGAGCGCGGCCAAACAGAGCCGCCGGCTCTGGCTACTGGAAAGCCACGGGATCAGACATACCCATTGTTAGTATGTCGGGAAGCGCGTCGC

Fln Alignment:

biogeco2_mira_rep_c20732___MEGVAFQQQAVPELLVGFRFHPTDEELITHYLEKKVSSSPLXXXXXXXXXXYQQD-------------------------RSGARPNRAAGSGYWKATGSDIPIVSMS
D5ABS0__________________MEGLAFHQQVLLQLPVGFRFEPTDEELLIYYLKKKVSSSPFPGSVIAEIDLYKHDPWDLPAKAFFGEKEWYFFSPRDREYPNGAPPNRSAGSGYWKATGTDKPIVITS

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
168	33			66	0.997464
170	33			66	0.997459
171		66	33		0.997467
173	33			66	0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain