SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene19560

Length: 404 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene19560
TTCAGGGACTGCACTGTTCAAGCTCCTTGCCTTCTGATAATGGGGAACAAAGATTATGTAATGAAATTTCCAGGGATGGAGTACTATATCAAGAGTGAAATGATCAAGTCTGACGTGCCCAATCTGGAGATCAAATATATTTCAGAAGGAAGCCATTTTGTTCAGGAACAGTTTCCAGAAGAAGTGAATAAGCTTATCATTGGCTTCCTGAATCAGCACCTGTGAGCTATGGCTTCCTGAATCAGCATCTGTGAGCTACGAGCAGTAGCTCACAGTAGATAGACTACTGCAAATCAATTTTAAACACCAAAATTCCAGAGGCAGAGGCAGGAGTTGGTGATGGGACTTGTTTTTATGGGACTTGTTTTTAGAGAATAATTGGTGATTACACAAGGAAGAGAATA

Ace file of the UniGene biog2_v2.0_unigene19560 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7255	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Epoxide hydrolase n=2 Tax=Nicotiana RepID=Q9ZP87_TOBAC	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	83%
Blast2go	epoxide hydrolase 2-like	-	-	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	0.0	74%
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	74%

Source	InterPros	Term	Type	e value	Identity
Sma3	Alpha/beta hydrolase fold-1	IPR000073	-	0.0	-
Sma3	Epoxide hydrolase-like	IPR000639	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ACP4

Fln msg: your sequence is shorter than subject: 75 - 321

Fln protein: FRDCTVQAPCLLIMGNKDYVMKFPGMEYYIKSEMIKSDVPNLEIKYISEGSHFVQEQFPEEVNKLIIGFLNQHL*

Protein Length: 76

Fln nts: TTCAGGGACTGCACTGTTCAAGCTCCTTGCCTTCTGATAATGGGGAACAAAGATTATGTAATGAAATTTCCAGGGATGGAGTACTATATCAAGAGTGAAATGATCAAGTCTGACGTGCCCAATCTGGAGATCAAATATATTTCAGAAGGAAGCCATTTTGTTCAGGAACAGTTTCCAGAAGAAGTGAATAAGCTTATCATTGGCTTCCTGAATCAGCACCTGTGA___GCTATGGCTTCCTGAATCAGCATCTGTGAGCTACGAGCAGTAGCTCACAGTAGATAGACTACTGCAAATCAATTTTAAACACCAAAATTCCAGAGGCAGAGGCAGGAGTTGGTGATGGGACTTGTTTTTATGGGACTTGTTTTTAGAGAATAATTGGTGATTACACAAGGAAGAGAATA

Fln Alignment:

biogeco2_mira_rep_c20638___RDCTVQAPCLLIMGNKDYVMKFPGMEYYIKSEMIKSDVPNLEIKYISEGSHFVQEQFPEEVNKLIIGFLNQHL
D5ACP4__________________RDYTIQAPSLLIMGNKDYAMKYPGMEYHINSETLKSDVPNLEIKYLSEGSHFVQEQFPEEVNKLLLGFLNQHL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain