SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene19535

Length: 836 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene19535 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16324	9/9

Source	Descriptions	Term	Type	Identity
AutoFact	Sucrose synthase n=1 Tax=Pinus taeda RepID=A6N837_PINTA	-	-	98%
FL-Next	tr=Sucrose synthase; Pinus taeda (Loblolly pine).	-	-	68%
Blast2go	sucrose synthase	-	-	86%

Source	InterPros	Term	Type	Identity
Sma3	Sucrose synthase	IPR000368	-	-
Sma3	Glycosyl transferase, family 1	IPR001296	-	-
Sma3	Glycosyl transferase, family 20	IPR001830	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Trehalose-phosphatase	IPR003337	-	-
Sma3	Sucrose synthase, plant/cyanobacteria	IPR012820	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A6N837

Fln msg: Overlapping hits, possible frame ERROR between 50 and 34, and overlapping frame ERROR between 704 and 695, Distance to subject end: 269 aas, your sequence is shorter than subject: 279 - 833

Fln protein: PHGYFGQANVxxxxxxxGGQVVYILDQCRALENEMLLRIKQQGLDITPEIIVVTRLIPEAHGTTCNQRLEKISGTQHSRILRVPFRTEKGVVRDWVSRFDVWPYLERFSEDVTNEIAVELKGQPDLIIGNYSDGNLVASLMAHKQGITQCNIAHALEKTKYPDSDIYWKNFEEKYHFSCQFTADLIAMNHADSLSLAHIKRLQGARILLDSTKATLLSPFLVSTVWYMELxxxxxSSTLFLLEQTCRFISLIQTSSIALLLYMVQLRNSCSILNRQLNI

Protein Length: 280

Fln nts: CACCTCATGGTTATTTTGGCCAAGCAAATGTTxxxxxxxxxxxxxxxxxxxxxGGTGGACAGGTTGTGTATATACTTGATCAATGTCGCGCCTTGGAGAATGAAATGCTATTGAGAATAAAACAACAAGGATTGGACATTACGCCTGAGATTATTGTGGTGACTCGGCTGATCCCTGAGGCTCACGGGACAACATGCAATCAACGACTTGAAAAAATTAGTGGAACACAACATTCACGGATCCTACGGGTGCCCTTCAGAACAGAAAAAGGAGTTGTGCGCGACTGGGTTTCTCGATTTGATGTGTGGCCTTACTTGGAAAGATTTTCGGAGGATGTAACAAATGAAATAGCCGTGGAGCTGAAAGGTCAACCTGATCTGATTATTGGCAATTACAGTGATGGAAATTTAGTCGCATCTTTGATGGCACATAAACAAGGAATCACTCAGTGCAACATAGCCCATGCTTTGGAGAAGACCAAATACCCAGATTCGGACATATATTGGAAGAATTTTGAAGAAAAATACCATTTCTCTTGTCAGTTTACTGCAGATCTAATCGCAATGAACCATGCGGATTCATTATCACTAGCACATATCAAGAGATTGCAGGGAGCAAGGATACTGTTGGACAGTACGAAAGCCACACTGCTTTCACCCTTCCTGGTCTCTACCGTGTGGTACATGGAATTGxxxxxxxxxxxxxxxAGTTCAACATTGTTTCTCCTGGAGCAGACATGCAGATTTATTTCCCTTATACAGACAAGCAGCATCGCCTTACTGCTTTACATGGTACAATTGAGGAACTCTTGTTCAATCCTGAACAGACAGCTGAACATA

Fln Alignment:

biogeco2_mira_rep_c20486___PHGYFGQANVxxxxxx-TGGQVVYILDQCRALENEMLLRIKQQGLDITPEIIVVTRLIPEAHGTTCNQRLEKISGTQHSRILRVPFRTEKGVVRDWVSRFDVWPYLERFSEDVTNEIAVELKGQPDLIIGNYSDGNLVASLMAHKQGITQCNIAHALEKTKYPDSDIYWKNFEEKYHFSCQFTADLIAMNHADSLSLAHIKRLQxxxKFNIVSPGADMQIYFPYTDKQHRLTALHGTIEELLFNPEQTAEH
A6N837__________________PHGYFGQANVxxxxxxPVDRLCIYLINVA-PLENEMLLRIKQQGLDITPEIIVVTRLIPEAHGTTCNQRLEKISGTQHSRILRVPFRTEKGVVRDWVSRFDVWPYLERFSEDVTNEIAVELKGQPDLIIGNYSDGNLVASLMAHKQGITQCNIAHALEKTKYPDSDIYWKNFEEKYHFSCQFTADLIAMNHADFIITSTYQEIAxxxKFNIVSPGADMQIYFPYTEKQHRLTALHGTIEELLFNPEQTAEH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain