SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene19501

Length: 676 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene19501 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16654	19/20
SustainPine v2.0	sp_v2.0_unigene22816	1/20

Source	Descriptions	Term	Type	Identity
AutoFact	Proteasome subunit beta type n=1 Tax=Picea sitchensis RepID=A9NMG7_PICSI	-	-	93%
FL-Next	sp=Proteasome subunit beta type; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	proteasome subunit beta type-1	-	-	92%

Source	GOs	Term	Type	Identity
Blast2go	defense response to fungus, incompatible interaction	GO:0009817	Biological Process	92%
Blast2go	peptidase activity	GO:0008233	Molecular Function	92%
Blast2go	plasma membrane	GO:0005886	Cellular Component	92%
Blast2go	proteasome complex	GO:0000502	Cellular Component	92%
Blast2go	chloroplast	GO:0009507	Cellular Component	92%

Source	InterPros	Term	Type	e value	Identity
Sma3	Proteasome, subunit alpha/beta	IPR001353	-	0.0	-
Sma3	Proteasome, beta-type subunit, conserved site	IPR016050	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
190		87		12	0.992554
519	88		11		0.923564
528	10			90	0.902986
529	10		90		0.902983
530			90	10	0.902989
596		11		88	0.924009
618		11	66		0.999999
619		33	66		1.0
620		33		66	1.0
622		11		33	1.0
626		50	50		1.0
627		50	50		1.0
629	50	50			1.0
632		60		40	1.0
655			66	33	0.997467

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain