SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene19470

Length: 424 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene19470
GAAAGCTGGGCTGAAAAGGTGTGGAAAGAGCTGCAGATTGCGTTGGTTAAACTACCTTCGGCCATGTATCAAGAGAGGAAATATTACGCCCGATGAAGAAGAGCTTATTATCAGAATGCACGCCCTTCTTGGCAACAGATGGTCAATAATCGCAGGGAGAGTCCCTGGCAGAACAGACAATGAAATAAAGAACTACTGGAATACCAAATTAAGCAGAAAACTTGCTAGCAGAGGGATTGATCCCAAAACCCATAAATTCATCACGATGGATAGCAATAACAGAGCTGGTGATGCTTTCAACCAGTTTAAAGGTGATGCTTTCAACCAGTTTAAAGCTGAGAAACCATATTACTGCTTACAGAGATCACAATATTTGGTAGCCAATACTAGTCAGTCAACGGATCTGGTGATTCCCCATGTTCAC

Ace file of the UniGene biog2_v2.0_unigene19470 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene33737	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	MYB-like transcriptional factor MBF1 n=1 Tax=Picea mariana RepID=Q40920_PICMA	-	-	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	79%
Blast2go	myb-like protein p	-	-	85%

Source	InterPros	Term	Type	Identity
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Peptidase C48, SUMO/Sentrin/Ubl1	IPR003653	-	-
Sma3	Transposon, En/Spm-like	IPR004242	-	-
Sma3		IPR012287	-	-
Sma3		IPR014778	-	-
Sma3	Myb transcription factor	IPR015495	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AC04

Fln msg: Distance to subject end: 168 aas, your sequence is shorter than subject: 141 - 349

Fln protein: KAGLKRCGKSCRLRWLNYLRPCIKRGNITPDEEELIIRMHALLGNRWSIIAGRVPGRTDNEIKNYWNTKLSRKLASRGIDPKTHKFITMDSNNRAGDAFNQFKGDAFNQFKAEKPYYCLQRSQYLVANTSQSTDLVIPHVH

Protein Length: 142

Fln nts: GAAAGCTGGGCTGAAAAGGTGTGGAAAGAGCTGCAGATTGCGTTGGTTAAACTACCTTCGGCCATGTATCAAGAGAGGAAATATTACGCCCGATGAAGAAGAGCTTATTATCAGAATGCACGCCCTTCTTGGCAACAGATGGTCAATAATCGCAGGGAGAGTCCCTGGCAGAACAGACAATGAAATAAAGAACTACTGGAATACCAAATTAAGCAGAAAACTTGCTAGCAGAGGGATTGATCCCAAAACCCATAAATTCATCACGATGGATAGCAATAACAGAGCTGGTGATGCTTTCAACCAGTTTAAAGGTGATGCTTTCAACCAGTTTAAAGCTGAGAAACCATATTACTGCTTACAGAGATCACAATATTTGGTAGCCAATACTAGTCAGTCAACGGATCTGGTGATTCCCCATGTTCAC

Fln Alignment:

biogeco2_mira_rep_c20061___KAGLKRCGKSCRLRWLNYLRPCIKRGNITPDEEELIIRMHALLGNRWSIIAGRVPGRTDNEIKNYWNTKLSRKLASRGIDPKTHKFITMDSNNRAGDAFNQFKGDAFNQFKAEKPYYCLQRSQYLVAN------TSQSTDLVIPHVH
D5AC04__________________KAGLRRCGKSCRLRWLNYLRPCIKRGNITADEEELIIRMHALLGNRWSIIAGRVPGRTDNEIKNHWNTKLSRKLASRGIDPKTHKFITTDSSNRA--------GDRFDQFQSEKQYYCSQRSQHLVSNVPKVVKVGRSTDLVIPHVH

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain