SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene19469

Length: 338 nt

UniGene Fasta

>biog2_v2.0_unigene19469
ACATGGGGCTGCTTCCCTGAGATTGAATTCAGTTCAGTTCAAGCGAAATAATGGGGAATGTTCTGCATTTAATCTTCGGCATCTTGGGGAATGTTTTCGGAACAGCACTCTTTCTGTCGCCTGCGGTTACATTCTATTACGTGATAAGAAAGGGTTCTACAGAGGAGTTCTCAGGGATCCCATATGTGGCAGCACTCTTAAACTGCCTTTTGTACACTTGGTATGGCCTGCCCTTCATAACATCTGATAATATTCTGGTCACTGTTTCCAATGGATCGGGAGCCGTTCTAGAGATGATATATGTGTGCCTCTACTTGGCATATTCTCCTCCAAAGTAC

Ace file of the UniGene biog2_v2.0_unigene19469

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9601	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Nodulin MtN3-like protein [Arabidopsis thaliana] sp\|Q8L9J7.1\|SWET1_ARATH RecName: Full=Bidirectional sugar transporter SWEET1; Short=AtSWEET1 gb\|AAM65929.1\| unknown [Arabidopsis thaliana] gb\|AAO42204.1\| unknown protein [Arabidopsis thaliana] gb\|AAO63896.1	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	53%
Blast2go	bidirectional sugar transporter sweet1-like	-	-	71%

Source	GOs	Term	Type	Identity
Blast2go	transport	GO:0006810	Biological Process	71%
Blast2go	sugar transmembrane transporter activity	GO:0051119	Molecular Function	71%
Blast2go	integral to plasma membrane	GO:0005887	Cellular Component	71%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	71%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	RAG1-activating protein-1-related	IPR004316	-	-
Sma3	Zinc finger, PMZ-type	IPR006564	-	-
Sma3	Zinc finger, SWIM-type	IPR007527	-	-
Sma3		IPR018169	-	-
Sma3		IPR018179	-	-
Sma3	Beta-ketoacyl synthase, active site	IPR018201	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NQ39

Fln msg: Distance to subject end: 165 aas, your sequence is shorter than subject: 96 - 260

Fln protein: MGNVLHLIFGILGNVFGTALFLSPAVTFYYVIRKGSTEEFSGIPYVAALLNCLLYTWYGLPFITSDNILVTVSNGSGAVLEMIYVCLYLAYSPPKY

Protein Length: 97

Fln nts: ACATGGGGCTGCTTCCCTGAGATTGAATTCAGTTCAGTTCAAGCGAAATA_-_ATGGGGAATGTTCTGCATTTAATCTTCGGCATCTTGGGGAATGTTTTCGGAACAGCACTCTTTCTGTCGCCTGCGGTTACATTCTATTACGTGATAAGAAAGGGTTCTACAGAGGAGTTCTCAGGGATCCCATATGTGGCAGCACTCTTAAACTGCCTTTTGTACACTTGGTATGGCCTGCCCTTCATAACATCTGATAATATTCTGGTCACTGTTTCCAATGGATCGGGAGCCGTTCTAGAGATGATATATGTGTGCCTCTACTTGGCATATTCTCCTCCAAAGTAC

Fln Alignment:

biogeco2_mira_rep_c20060___VLHLIFGILGNVFGTALFLSPAVTFYYVIRKGSTEEFSGIPYVAALLNCLLYTWYGLPFITSDNILVTVSNGSGAVLEMIYVCLYLAY
A9NQ39__________________IAHFIFGIFGNITALTLFLAPLITFWTIIKNKSTEQFSGFPYVSTLLNCLLSAWYGLPFVSPNNLLVSTVNGTGAAIELCYVIVFLFY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain