SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
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ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene19437

Length: 472 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene19437
AATAGACGTGGTGAAGATGAGAGGTTGAGTGTGGTGCTGAGGCAGGAGGAGAACATGATGCTGATGCAGATGGTGAAGGGGAAGAGAGTCCTCAAAGATCGACTGAGGATAGTGAGAATGCGTCTGAAGCTGGTGAAGATGTTCAGGTAGCGAATCTGGAGATGGTGATGAGTGCTCGCATGAAGATCACGAGGAGGAAGAGGAAGATGATGATGAGCATGAAGAAAATGATGGGAAGGCTGAAAGTGAAGGTGAGGCTGAGGTAACAGCTGATGCGCAGGATGTTGATGGAGAAGGGACATCCTTGGCACTTTCAGATCGTTCTCTGCTTACAGCCAAGCCTCTTGCAATACATGTTCCTTCTACTTTAAACAATGGAGCGCCAAAAGATTCAAAAGTTTTCTATGGAAATGACTCCTTTTATGTGCTTTTCAGGCTCCACCAGACATTATATGAGCGAATACTCTCAGCA

Ace file of the UniGene biog2_v2.0_unigene19437 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene28426	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	transcriptional co-repressor -like [Oryza sativa Japonica Group]	-	-	52%
FL-Next	sp=Paired amphipathic helix protein Sin3-like 3; Arabidopsis thaliana (Mouse-ear cress).	-	-	58%
Blast2go	paired amphipathic helix protein sin3-like 4-like	-	-	69%

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L15e	IPR000439	-	-
Sma3	Paired amphipathic helix	IPR003822	-	-
Sma3	Histone deacetylase interacting	IPR013194	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: O48686

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 254 aas, your sequence is shorter than subject: 157 - 1330

Fln protein: IDVVKMRG*VWC*GRRRT*C*CRW*RGRESSKID*G**ECV*SW*RCSGSESGDGDECSHEDHEEEEEDDDEHEENDGKAESEGEAEVTADAQDVDGEGTSLALSDRSLLTAKPLAIHVPSTLNNGAPKDSKVFYGNDSFYVLFRLHQTLYERILSA

Protein Length: 158

Fln nts: AATAGACGTGGTGAAGATGAGAGGTTGAGTGTGGTGCTGAGGCAGGAGGAGAACATGATGCTGATGCAGATGGTGAAGGGGAAGAGAGTCCTCAAAGATCGACTGAGGATAGTGAGAATGCGTCTGAAGCTGGTGAAGATGTTCAGGTAGCGAATCTGGAGATGGTGATGAGTGCTCGCATGAAGATCACGAGGAGGAAGAGGAAGATGATGATGAGCATGAAGAAAATGATGGGAAGGCTGAAAGTGAAGGTGAGGCTGAGGTAACAGCTGATGCGCAGGATGTTGATGGAGAAGGGACATCCTTGGCACTTTCAGATCGTTCTCTGCTTACAGCCAAGCCTCTTGCAATACATGTTCCTTCTACTTTAAACAATGGAGCGCCAAAAGATTCAAAAGTTTTCTATGGAAATGACTCCTTTTATGTGCTTTTCAGGCTCCACCAGACATTATATGAGCGAATACTCTCAGCA

Fln Alignment:

biogeco2_mira_rep_c20013___KAESEGEAEVTADAQDVDGEGTSLALSDRSLLTAKPLAIHVPSTL-----NNGAPKDSKVFYGNDSFYVLFRLHQTLYERILSA
O48686__________________KGESEGEAECMADAHDAEENGSALPVSARFLLHVKPLVKYVPSAIALHDKDKDSLKNSQVFYGNDSFYVLFRLHRILYERILSA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain