SustainPineDB

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Assembly info
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene19434

Length: 337 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene19434
ATGGGGGTGGTAAGAGACGCTCGGTCATCATTTGCTTATTTTCTGGTACAAGTAGCGGCACAAAAGAGCGGTGTTTCGAAAATGGAGAGTTCAGGAAAGAGCGGTGGCAAGGGAGGGAGGAAGGGAGGAGCCTCCAGAAAGAAGTCGGTTAGCAGAGCAGTGAAGGCCGGGTTGCAGTTTCCGGTAGGAAGGATCGCAAGATATCTGAAGAAGGGGCGGTATGCTAAGCGGTTGGAGGCGGTGCTGCTGTCTACACTGCTGCCGTCCTCGAATATCTGGCAGCTGAGGTGTTGGAATTGGCCGGAAACGCCGCTCGTGACAACAAGAAGACCAGAAT

Ace file of the UniGene biog2_v2.0_unigene19434 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22073	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Histone H2A n=8 Tax=Picea sitchensis RepID=A9P2B3_PICSI	-	-	9.0e-33	75%
FL-Next	sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Blast2go	histone h2a	-	-	3.02302e-41	94%

Source	InterPros	Term	Type	Identity
Sma3	Histone-fold	IPR009072	-	-
Sma3	Histone core	IPR007125	-	-
Sma3	Histone H2A	IPR002119	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LN64

Fln msg: Separated hits, possible frame ERROR between 234 and 303, Distance to subject end: 61 aas, your sequence is shorter than subject: 112 - 147

Fln protein: MGVVRDARSSFAYFLVQVAAQKSGVSKMESSGKSGGKGGRKGGASRKKSVSRAVKAGLQFPVGRIARYLKKGRYAKRxxxxxxxxxxxxxxxxxxxxxxxxGNAARDNKKTR

Protein Length: 113

Fln nts: _-_ATGGGGGTGGTAAGAGACGCTCGGTCATCATTTGCTTATTTTCTGGTACAAGTAGCGGCACAAAAGAGCGGTGTTTCGAAAATGGAGAGTTCAGGAAAGAGCGGTGGCAAGGGAGGGAGGAAGGGAGGAGCCTCCAGAAAGAAGTCGGTTAGCAGAGCAGTGAAGGCCGGGTTGCAGTTTCCGGTAGGAAGGATCGCAAGATATCTGAAGAAGGGGCGGTATGCTAAGCGGTTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCGGAAACGCCGCTCGTGACAACAAGAAGACCAGAAT

Fln Alignment:

biogeco2_mira_rep_c20007___RAVKAGLQFPVGRIARYLKKGRYAKRLxxxxxxxxxxxxxxxxxxxxxxxGNAARDNKKTR
B8LN64__________________RTVKAGLQFPVGRIARYLKKGRYAKRVxxxxxxxxxxxxxxxxxxxxxxxGNAARDNKKTR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain