SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene19432

Length: 435 nt

UniGene Fasta

>biog2_v2.0_unigene19432
GTTCCTCAAGACCTATGCGAATAGGTCCTGCCACAACAAAGAAGACCACAGTTTTTCAGCAACCATATCCGAAACGATGCCAAGAGGCTCTGTTCCGTTAGGGGCCTGGAACAAAATTCAGCACAGAAAAGCGTCCTTTTAGTGGGTGGCCTCACTTAGCAGCGGCAGTTCCTCCTCAAGTAGTTGCCTCAGATAATGATCCAAATAATACAACTATATTTGTGGTGGCTTAGACCCAACTGTGACAGATGATATGCTGAGATCGTTATTTGGTCAGTTTGGAGAACTTGTGCATGTCAAAATACCAGTGGGCAAACGTTGTGGATTTGTTCAGTTTAATAACAGGGCTTCTGCAGAGGAAGCATTGCAAATGCTACATGGTACAGTTCTTGGTCAGCAAGCCATTCGTCTTTCTTGGGGACGAGTCCTGCAAAC

Ace file of the UniGene biog2_v2.0_unigene19432

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16872	1/2
SustainPine v2.0	sp_v2.0_unigene61070	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	RNA recognition motif-containing protein [Arabidopsis thaliana] gb\|AAL67015.1\| putative DNA binding protein ACBF [Arabidopsis thaliana] gb\|AAM45052.1\| putative DNA binding protein ACBF [Arabidopsis thaliana] gb\|AED92689.1\| RNA recognition motif-containing	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	59%
Blast2go	protein	-	-	82%

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Twin-arginine translocation pathway, signal sequence	IPR006311	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Domain of unknown function DUF1767	IPR013894	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRZ2

Fln msg: ERROR#3, very serious frame error, Overlapping hits, possible frame ERROR between 224 and 224, Distance to subject end: 60 aas, your sequence is shorter than subject: 144 - 418

Fln protein: SSRPMRIGPATTKKTTVFQQPYPKRCQEALFR*GPGTKFSTEKRPFSGWPHLAAAVPPQVVASDNDPNNTTIFxxGLDPTVTDDMLRSLFGQFGELVHVKIPVGKRCGFVQFNNRASAEEALQMLHGTVLGQQAIRLSWGRVLQ

Protein Length: 145

Fln nts: GTTCCTCAAGACCTATGCGAATAGGTCCTGCCACAACAAAGAAGACCACAGTTTTTCAGCAACCATATCCGAAACGATGCCAAGAGGCTCTGTTCCGTTAGGGGCCTGGAACAAAATTCAGCACAGAAAAGCGTCCTTTTAGTGGGTGGCCTCACTTAGCAGCGGCAGTTCCTCCTCAAGTAGTTGCCTCAGATAATGATCCAAATAATACAACTATATTTxxxxxxGGCTTAGACCCAACTGTGACAGATGATATGCTGAGATCGTTATTTGGTCAGTTTGGAGAACTTGTGCATGTCAAAATACCAGTGGGCAAACGTTGTGGATTTGTTCAGTTTAATAACAGGGCTTCTGCAGAGGAAGCATTGCAAATGCTACATGGTACAGTTCTTGGTCAGCAAGCCATTCGTCTTTCTTGGGGACGAGTCCTGCAAAC

Fln Alignment:

biogeco2_mira_rep_c20003___SSRPMRIGPATTKKTTVFQQPYPKRCQEALFR*GPGTKFSTEKRPFSGWPHLAAAVPPQVVASDNDPNNTTIFVGGLDPTVTDDMLRSLFGQFGELVHVKIPVGKRCGFVQFNNRASAEEALQMLHGTVLGQQAIRLSWGR
B8LRZ2__________________SSRPMRTGPATTKKTTGFQQPYPKAA--------------------------AAAVPPQVVASDNDPNNTTIFVGGLDPSVTDEMLRQLFGQFGELVHVKIPVGKRCGFVQFNNRASAEEALQMLHGTVLGQQAIRLSWGR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain