SustainPineDB

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Assembly info
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene19407

Length: 388 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene19407
TCATATCCTATCAAGTTATTCTATACCTCAAACATGCCAATTATTCTGCAGTCAGCTCTTGTTTCAAATTTGTATTTTATTCCCAGCTGCTTTATCGAAAGTACAGTGGAAACTTCCTTGTTAATATGTTGGGAAAGTGGAAGGAGTCTGAATACTCAGCAAGCGGGCAGTCAGTTCCTGTAGGTGGTCTTGTTTATTACATTACTCCACCTTCCAGCTTGGCAGAGATGGCAGCAAATCCCTTCCATGCTCTTTTCTATTTGACTTTTATGCTGACCGCATGTGCACTGTTTTCAAAGACATGGATTGAAGTATCTGGTTCCTCTGCCAGAGATGTGGCAAAACAACTAAAGGAGCAACAAATGGTTATGCCAGGCCACAGAGAATC

Ace file of the UniGene biog2_v2.0_unigene19407 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16462	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	[U] COG0201 Preprotein translocase subunit SecY	-	-	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Blast2go	protein transport protein sec61 subunit alpha	-	-	96%

Source	GOs	Term	Type	e value	Identity
Blast2go	cell part	GO:0044464	Cellular Component	0.0	96%

Source	InterPros	Term	Type	e value	Identity
Sma3	SecY protein	IPR002208	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKZ6

Fln msg: Overlapping hits, possible frame ERROR between 81 and 75, Distance to subject end: 67 aas, your sequence is shorter than subject: 129 - 478

Fln protein: SYPIKLFYTSNMPIILQSALVSNLxxxxQLLYRKYSGNFLVNMLGKWKESEYSASGQSVPVGGLVYYITPPSSLAEMAANPFHALFYLTFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRE

Protein Length: 130

Fln nts: TCATATCCTATCAAGTTATTCTATACCTCAAACATGCCAATTATTCTGCAGTCAGCTCTTGTTTCAAATTTGxxxxxxxxxxxxCAGCTGCTTTATCGAAAGTACAGTGGAAACTTCCTTGTTAATATGTTGGGAAAGTGGAAGGAGTCTGAATACTCAGCAAGCGGGCAGTCAGTTCCTGTAGGTGGTCTTGTTTATTACATTACTCCACCTTCCAGCTTGGCAGAGATGGCAGCAAATCCCTTCCATGCTCTTTTCTATTTGACTTTTATGCTGACCGCATGTGCACTGTTTTCAAAGACATGGATTGAAGTATCTGGTTCCTCTGCCAGAGATGTGGCAAAACAACTAAAGGAGCAACAAATGGTTATGCCAGGCCACAGAGAATC

Fln Alignment:

biogeco2_mira_rep_c19968___SYPIKLFYTSNMPIILQSALVSNLYxxSQLLYRKYSGNFLVNMLGKWKESEYSASGQSVPVGGLVYYITPPSSLAEMAANPFHALFYLTFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRE
B8LKZ6__________________SYPIKLFYTSNMPIILQSALVSNLYxxSQLLYRKYSGNFLVNMLGKWKESEYSSSGQSIPVGGLVYYITPPSSLAEMAANPFHALFYLTFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain