SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene19384

Length: 245 nt

UniGene Fasta

>biog2_v2.0_unigene19384
ATGGGAGAGCTGATAATCAAGGATATCAACATAGGTATCCTTCAGATAGCTGTCAAAACTATAACAGTGGAGTGTATAATGGCAGTCAGATTCATGGTCAGGGTTATATAGCCTCTGCTTACAATTCTTATGGTGGAACATACAATGGCAGTCAGAATCATGGCCAGGGTTATACAGCCGCTGCTAGCAATTCTTATGGTGGAATATACAATATGGGTGACAGTCATAACAGGAATGATAATCAT

Ace file of the UniGene biog2_v2.0_unigene19384

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6157	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	putative 5-3 exoribonuclease [Oryza sativa Japonica Group]	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	80%
Blast2go	5 -3 exoribonuclease 3-like	-	-	63%

Source	GOs	Term	Type	Identity
Blast2go	miRNA catabolic process	GO:0010587	Biological Process	63%
Blast2go	metal ion binding	GO:0046872	Molecular Function	63%
Blast2go	5'-3' exoribonuclease activity	GO:0004534	Molecular Function	63%
Blast2go	nucleus	GO:0005634	Cellular Component	63%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Putative 5-3 exonuclease	IPR004859	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3		IPR015706	-	-
Sma3	5'-3' exoribonuclease 2	IPR017151	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A8N3

Fln msg: Distance to subject end: 99 aas, your sequence is shorter than subject: 81 - 393

Fln protein: GRADNQGYQHRYPSDSCQNYNSGVYNGSQIHGQGYIASAYNSYGGTYNGSQNHGQGYTAAASNSYGGIYNMGDSHNRNDNH

Protein Length: 82

Fln nts: ATGGGAGAGCTGATAATCAAGGATATCAACATAGGTATCCTTCAGATAGCTGTCAAAACTATAACAGTGGAGTGTATAATGGCAGTCAGATTCATGGTCAGGGTTATATAGCCTCTGCTTACAATTCTTATGGTGGAACATACAATGGCAGTCAGAATCATGGCCAGGGTTATACAGCCGCTGCTAGCAATTCTTATGGTGGAATATACAATATGGGTGACAGTCATAACAGGAATGATAATCAT

Fln Alignment:

biogeco2_mira_rep_c19931___RADNQGYQHRYPSDSCQNYNSGVYNGSQIHGQGYIASAYNSYGGTYNGSQNHGQGYTAAASNSYGGIYNMGDSHNRNDNH
D5A8N3__________________RGDNQGYQHGYPSDSGQKYNSGVYNGSQNHGQGYTASARNSYGGTYDGSQNHGQGYTAPASNLYGGTYNKGERHNGNENH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain