SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene19382

Length: 550 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene19382
CTTCTCAACATGTGATGCAGTGGATTTCCACTATGCTGCCATAAGTGAGTTTCACTGGGTTTCACATTTTCAAGACGTGGATGAAGAAAAGGGAAGATTCATAAAATGCAAAACATTTCGTCTACATGGAAATATGGCACAAGCAGAACGAAAGGAAACCTTCCATGGATATAATGAAGAAAAATGTGCTCTTCTCTTGTGCACTGATGTAGCAGCAAGAGGCTTGGACTTTCCGAAAGTTGGATGCATTATTCAGTATGACTCTCCAGGAGATGCAAATGAATATGTGCACAGGGTTGGTAGAACAGCTCGTCTAGACCAGAAAGGTGAAGCTGTGTTATTTTTGCAGCCTATTGAGTTGGATTATTTGAAAGAATTGCAGAAACATGGCGTGCCCCTGAATGAGCTTTCAGTTCAAAATGTTTTGGATCATATTCAAGTGCGTGGAAGGACATATAATAAGCAAGCAAAATGGTCTGCAGTAGATATGCATCCCGGGGCATTGGCTATGCAGAAGGCTTTGGAATCATTCATTATGATGGAGGAAAGT

Ace file of the UniGene biog2_v2.0_unigene19382 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4020	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	putative ATP-dependent RNA helicase [Oryza sativa]	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	39%
Blast2go	dead-box atp-dependent rna helicase 17-like	-	-	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	helicase activity	GO:0004386	Molecular Function	0.0	66%
Blast2go	binding	GO:0005488	Molecular Function	0.0	66%

Source	InterPros	Term	Type	Identity
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	RNA helicase, DEAD-box type, Q motif	IPR014014	-	-
Sma3		IPR014021	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKZ7

Fln msg: STOP codon was not found. Distance to subject end: 12 aas, your sequence is shorter than subject: 183 - 504

Fln protein: FSTCDAVDFHYAAISEFHWVSHFQDVDEEKGRFIKCKTFRLHGNMAQAERKETFHGYNEEKCALLLCTDVAARGLDFPKVGCIIQYDSPGDANEYVHRVGRTARLDQKGEAVLFLQPIELDYLKELQKHGVPLNELSVQNVLDHIQVRGRTYNKQAKWSAVDMHPGALAMQKALESFIMMEES

Protein Length: 184

Fln nts: CTTCTCAACATGTGATGCAGTGGATTTCCACTATGCTGCCATAAGTGAGTTTCACTGGGTTTCACATTTTCAAGACGTGGATGAAGAAAAGGGAAGATTCATAAAATGCAAAACATTTCGTCTACATGGAAATATGGCACAAGCAGAACGAAAGGAAACCTTCCATGGATATAATGAAGAAAAATGTGCTCTTCTCTTGTGCACTGATGTAGCAGCAAGAGGCTTGGACTTTCCGAAAGTTGGATGCATTATTCAGTATGACTCTCCAGGAGATGCAAATGAATATGTGCACAGGGTTGGTAGAACAGCTCGTCTAGACCAGAAAGGTGAAGCTGTGTTATTTTTGCAGCCTATTGAGTTGGATTATTTGAAAGAATTGCAGAAACATGGCGTGCCCCTGAATGAGCTTTCAGTTCAAAATGTTTTGGATCATATTCAAGTGCGTGGAAGGACATATAATAAGCAAGCAAAATGGTCTGCAGTAGATATGCATCCCGGGGCATTGGCTATGCAGAAGGCTTTGGAATCATTCATTATGATGGAGGAAAGT

Fln Alignment:

biogeco2_mira_rep_c19928___LHGNMAQAERKETFHGYNEEKCALLLCTDVAARGLDFPKVGCIIQYDSPGDANEYVHRVGRTARLDQKGEAVLFLQPIELDYLKELQK
B8LKZ7__________________IHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDIKCVINYDFPGSMEDYVHRIGRTGRAGAKGTAYTYFTAANARFARDLIK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain