SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene19366

Length: 195 nt

UniGene Fasta

>biog2_v2.0_unigene19366
TGTGGTGGGCCTCATGACAAAGATGGATAAATTGACCCTTATTCAGATGGATTGGAAGCTTCCAATGGACATTTTGAAACTGTAATGCAGTTAGCAATTGAGGGTTGCAAAGCAATAGTTCGCTACATCCAGGATGTTCTTCTGGAGAACACAAAAAAGCTAGAATATCAAAAGGGACTTAGGTCTTGAGCAGTT

Ace file of the UniGene biog2_v2.0_unigene19366

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9192	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	exosome complex component RRP41 [Arabidopsis thaliana] ref\|NP_001118878.1\| exosome complex component RRP41 [Arabidopsis thaliana] gb\|AAF04590.1\|AF191741_1 exonuclease RRP41 [Arabidopsis thaliana] emb\|CAB71092.1\| exonuclease RRP41 [Arabidopsis thaliana] db	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	80%
Blast2go	exosome complex component rrp41	-	-	89%

Source	ECs	Term	Type	e value	Identity
Blast2go	tRNA nucleotidyltransferase.	EC:2.7.7.56	-	0.0	89%

Source	GOs	Term	Type	Identity
Blast2go	RNA processing	GO:0006396	Biological Process	89%
Blast2go	tRNA nucleotidyltransferase activity	GO:0009022	Molecular Function	89%
Blast2go	RNA binding	GO:0003723	Molecular Function	89%
Blast2go	3'-5'-exoribonuclease activity	GO:0000175	Molecular Function	89%

Source	InterPros	Term	Type	e value	Identity
Sma3	Exoribonuclease, phosphorolytic domain 1	IPR001247	-	0.0	-
Sma3	Exoribonuclease, phosphorolytic domain 2	IPR015847	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ADL6

Fln msg: Overlapping hits, possible frame ERROR between 79 and 73, your sequence is shorter than subject: 63 - 243

Fln protein: VVGLMTKMDKLTLIQMDWKLPMDxxxxVMQLAIEGCKAIVRYIQDVLLENTKKLEYQKGLRS*

Protein Length: 64

Fln nts: TGTGGTGGGCCTCATGACAAAGATGGATAAATTGACCCTTATTCAGATGGATTGGAAGCTTCCAATGGACxxxxxxxxxxxxGTAATGCAGTTAGCAATTGAGGGTTGCAAAGCAATAGTTCGCTACATCCAGGATGTTCTTCTGGAGAACACAAAAAAGCTAGAATATCAAAAGGGACTTAGGTCTTGAGCAGTT

Fln Alignment:

biogeco2_mira_rep_c19897___VGLMTKMDKLTLIQMDWKLPMDIxxTVMQLAIEGCKAIVRYIQDVLLENTKKLEYQKGLRS
D5ADL6__________________VGLMTKMDKLSLLQMDSKLPMDIxxTVMQLAIEGCKAIVRYIQDVLLENTKQLEYQKGLRS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain