SustainPineDB

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Assembly info
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ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene19345

Length: 443 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene19345
CTGATTTGTTGGTATTCTGAATAATGGAGAGCACAGCTTCCTTCTCGGAGTCGCATCAGCATCAGCAGCCACAGCTGCTCCGGGATTTCGATTTCACCCCACAGATGAGGAGTTGGTTGTTCATTACTTGAAGAAGAAGGCATCTTCCACGCCTCTGCCTGTGACGATTATTGCAGAAATTGACCTTTACAAGTTTGATCCCTGGGAGCTACCTGAGAAGGCAACCTTTGGAGAGCAAGAATGGTATTTTTCAGCCCAAGGGACAGGAAATACCCAAACGGGGCTAGACCTAATAGAGCTGCAACATCTGGGTACTGGAAAGCTACTGGAACGGACAAGCCTATATTAACATCTACATCAGCAGGTACACAGAAGGTGGGAGTGAAGAAGGCCCTGGTGTTCTATGGAGGCAGACCACCCAAAGGGATAAAAACCAACTGGAT

Ace file of the UniGene biog2_v2.0_unigene19345 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene21505	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	NAM-like protein [Prunus persica]	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	77%
Blast2go	nac domain ipr003441	-	-	74%

Source	InterPros	Term	Type	Identity
Sma3	No apical meristem (NAM) protein	IPR003441	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NS66

Fln msg: Overlapping hits, possible frame ERROR between 250 and 247, Distance to subject end: 183 aas, W1: There is no M at the beginning, your sequence is shorter than subject: 146 - 324

Fln protein: FVGILNNGEHSFLLGVASASAATAAPGFRFHPTDEELVVHYLKKKASSTPLPVTIIAEIDLYKFDPWELPEKATFGEQEWxxxSPRDRKYPNGARPNRAATSGYWKATGTDKPILTSTSAGTQKVGVKKALVFYGGRPPKGIKTNW

Protein Length: 147

Fln nts: CTGATTTGTTGGTATTCTGAATAATGGAGAGCACAGCTTCCTTCTCGGAGTCGCATCAGCATCAGCAGCCACAGCTGCTCCGGGATTTCGATTTCACCCCACAGATGAGGAGTTGGTTGTTCATTACTTGAAGAAGAAGGCATCTTCCACGCCTCTGCCTGTGACGATTATTGCAGAAATTGACCTTTACAAGTTTGATCCCTGGGAGCTACCTGAGAAGGCAACCTTTGGAGAGCAAGAATGGxxxxxxxxxAGCCCAAGGGACAGGAAATACCCAAACGGGGCTAGACCTAATAGAGCTGCAACATCTGGGTACTGGAAAGCTACTGGAACGGACAAGCCTATATTAACATCTACATCAGCAGGTACACAGAAGGTGGGAGTGAAGAAGGCCCTGGTGTTCTATGGAGGCAGACCACCCAAAGGGATAAAAACCAACTGGAT

Fln Alignment:

biogeco2_mira_rep_c19870___PGFRFHPTDEELVVHYLKKKASSTPLPVTIIAEIDLYKFDPWELPEKATFGEQEWYxFSPRDRKYPNGARPNRAATSGYWKATGTDKPILTSTSAGTQKVGVKKALVFYGGRPPKGIKTNW
A9NS66__________________PGFRFYPTDEELMVHYLCKRVASQPFPIPIIAEIDLYKFDPWQLPEKALFGEKEWYxFSPRDRKYPNGSRPNRAAGSGYWKATGTDKPV--TAGLNRMKVGVKKALVFYKGKAPRGIKTNW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain