SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene19293

Length: 439 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene19293
AATGTTGAATCATGTATTCCATCACATAACCGACACCCATGTGACTCATCATCTGTTCTCCACAATTCCTCATTACCATGCCGTAGAGACCACCAGGGCTATTAAACCGATTCTGGGCAACTATTACTGCTATGACAATACGCCTGTCTGTAACGCCTTATGGCGGGAGTTTAGAGAATGTGAGTATGTAGAGGCTGACTCCCCTGGCAAAAGTGGGATCGTATGGTACAGAAGCAAGTTCATATAATAGCAATCCCTGGATATTCAGTTGGACTTCTCTTTCATCCACCACTTCCTTCACTGCCTTATTTTGTACATGTGCAACATCTGATCACTAGGATGTGTTTATAAAAGATCCGTTCATGAAGTTATTGCGTCAGAAATAGTCATCCACCACAGCATTCAGATTCCGATGTGTTTATAGAAAGTCGCCGTTGTT

Ace file of the UniGene biog2_v2.0_unigene19293 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7394	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2 n=3 Tax=Zea mays RepID=B6TAY8_MAIZE	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	77%
Blast2go	omega-6 fatty acid endoplasmic reticulum isozyme 2	-	-	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	Oxidoreductases, Acting on paired donors, with incorporation or reduction of molecular oxygen, With oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water.	EC:1.14.19.-	-	0.0	78%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	alpha-Linolenic acid metabolism	00592		0.0	78%
Blast2go	Biosynthesis of unsaturated fatty acids	01040		0.0	78%

Source	GOs	Term	Type	Identity
Blast2go	lipid biosynthetic process	GO:0008610	Biological Process	78%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	78%
Blast2go	oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	GO:0016717	Molecular Function	78%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	78%
Blast2go	membrane part	GO:0044425	Cellular Component	78%

Source	InterPros	Term	Type	e value	Identity
Sma3	Fatty acid desaturase, type 1	IPR005804	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUQ3

Fln msg: your sequence is shorter than subject: 82 - 375

Fln protein: MLNHVFHHITDTHVTHHLFSTIPHYHAVETTRAIKPILGNYYCYDNTPVCNALWREFRECEYVEADSPGKSGIVWYRSKFI*

Protein Length: 83

Fln nts: AATGTTGAATCATGTATTCCATCACATAACCGACACCCATGTGACTCATCATCTGTTCTCCACAATTCCTCATTACCATGCCGTAGAGACCACCAGGGCTATTAAACCGATTCTGGGCAACTATTACTGCTATGACAATACGCCTGTCTGTAACGCCTTATGGCGGGAGTTTAGAGAATGTGAGTATGTAGAGGCTGACTCCCCTGGCAAAAGTGGGATCGTATGGTACAGAAGCAAGTTCATATAA___TAGCAATCCCTGGATATTCAGTTGGACTTCTCTTTCATCCACCACTTCCTTCACTGCCTTATTTTGTACATGTGCAACATCTGATCACTAGGATGTGTTTATAAAAGATCCGTTCATGAAGTTATTGCGTCAGAAATAGTCATCCACCACAGCATTCAGATTCCGATGTGTTTATAGAAAGTCGCCGTTGTT

Fln Alignment:

biogeco2_mira_rep_c19796___NHVFHHITDTHVTHHLFSTIPHYHAVETTRAIKPILGNYYCYDNTPVCNALWREFRECEYVEADSPGKSGIVWYRSK
A9NUQ3__________________NHVLHHITDTHVAHHLFSTMPHYHAMEATKAIKPILGNYYCYDNTPIYKAVWREFRECVYVEADSSQKSGVFWYKNK

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
376	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain