SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene19261

Length: 325 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene19261
GCAGTCTCAGTTACAAGGGGACACATTTATCAGAGAGAAATGTCTCTACAATAAGTGCTAGTTCCATTGAAGTGGAGGGACTAACTCAACATGATACAAATACAAATGGTGGCATCTATGTTCAGGCTGATGGAGAACATTTAGGATTCCTTCCAAGAAGATTTTTAATGTTACCTGGCACAATTGAGTTTTTGATATAAATTCCTTAAGTCAGCATGAGGAATATGTTCTGGATGTGTGGCCTCTTCAAATTTCATGATCCTCGGCTGCCCAGGTGTGGGCATTTCAGTAAATCAGTCAATAAAATAAACTCGTCTGTGTGATT

Ace file of the UniGene biog2_v2.0_unigene19261 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene772	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	diacylglycerol kinase-like protein [Arabidopsis thaliana] gb\|AAC62895.1\| expressed protein [Arabidopsis thaliana] gb\|AEC10642.1\| diacylglycerol kinase-like protein [Arabidopsis thaliana]	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	diacylglycerol kinase-like	-	-	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	NAD(+) kinase.	EC:2.7.1.23	-	0.0	77%

Source	KEGGs	Term	Type	Identity
Blast2go	Nicotinate and nicotinamide metabolism	00760		77%
Blast2go	Metabolic pathways	01100		77%
Blast2go	Diacylglycerol kinase.	EC:2.7.1.107	-	77%

Source	KEGGs	Term	Identity
Blast2go	Glycerolipid metabolism	00561	77%
Blast2go	Glycerophospholipid metabolism	00564	77%
Blast2go	Metabolic pathways	01100	77%
Blast2go	Phosphatidylinositol signaling system	04070	77%

Source	GOs	Term	Type	Identity
Blast2go	activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway	GO:0007205	Biological Process	77%
Blast2go	NAD+ kinase activity	GO:0003951	Molecular Function	77%
Blast2go	D-erythro-sphingosine kinase activity	GO:0017050	Molecular Function	77%
Blast2go	diacylglycerol kinase activity	GO:0004143	Molecular Function	77%
Blast2go	plastid	GO:0009536	Cellular Component	77%
Blast2go	mitochondrion	GO:0005739	Cellular Component	77%

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Diacylglycerol kinase, catalytic domain	IPR001206	-	-
Sma3	Diacylglycerol/lipid kinase	IPR005218	-	-
Sma3	Peptidase S1/S6, chymotrypsin/Hap, active site	IPR018114	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AD61

Fln msg: your sequence is shorter than subject: 66 - 126

Fln protein: SLSYKGTHLSERNVSTISASSIEVEGLTQHDTNTNGGIYVQADGEHLGFLPRRFLMLPGTIEFLI*

Protein Length: 67

Fln nts: GCAGTCTCAGTTACAAGGGGACACATTTATCAGAGAGAAATGTCTCTACAATAAGTGCTAGTTCCATTGAAGTGGAGGGACTAACTCAACATGATACAAATACAAATGGTGGCATCTATGTTCAGGCTGATGGAGAACATTTAGGATTCCTTCCAAGAAGATTTTTAATGTTACCTGGCACAATTGAGTTTTTGATATAA___ATTCCTTAAGTCAGCATGAGGAATATGTTCTGGATGTGTGGCCTCTTCAAATTTCATGATCCTCGGCTGCCCAGGTGTGGGCATTTCAGTAAATCAGTCAATAAAATAAACTCGTCTGTGTGATT

Fln Alignment:

biogeco2_mira_rep_c19745___YKGTHLSERNVSTISASSIEVEGLTQHDTNTNGGIYVQADGEHLGFLPRRFLMLPGTIEFLI
D5AD61__________________YKGTHLSERNVSTISASSIEVEELIEHATNTNGSIYVQADGENLGFLPRRFLMLPGTIDFLI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain