SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene19231

Length: 335 nt

UniGene Fasta

>biog2_v2.0_unigene19231
ACTGCTCTACTTCAATATCTCAATAGAAATGGAGTTCAGACACATTCGCCAGCTTATTCACATAGTTATAATACCTTTAGGTAAAAAATTGTCCACCATTATTTTGGGAGTCTTGGCTAGGGGAGAATTTGCATGCACTGCTTGTGCATTGTCGGCAAGTTCTCTCTGCTTCTTGGGTCAGCCTTATAAGTGAGGGAAGAGCGAAAGTTCCAGATTCTTGTTGCTATAGTTCTGCACTGGGTTTAAAGGTGGAGGTTATGGAAGAAAAGCTCCTAAGAGATTTGACTCGAGAGACTTGTGCTTTGTTGGCAGCATTGGCTTCCCCTGGGGCCAAC

Ace file of the UniGene biog2_v2.0_unigene19231

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene33767	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	HASTY [Arabidopsis thaliana]	-	-	54%
FL-Next	sp=Protein HASTY 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	58%
Blast2go	protein hasty 1-like	-	-	68%

Source	GOs	Term	Type	Identity
Blast2go	root development	GO:0048364	Biological Process	68%
Blast2go	pre-miRNA export from nucleus	GO:0035281	Biological Process	68%
Blast2go	carotenoid biosynthetic process	GO:0016117	Biological Process	68%
Blast2go	polarity specification of adaxial/abaxial axis	GO:0009944	Biological Process	68%
Blast2go	negative regulation of flower development	GO:0009910	Biological Process	68%
Blast2go	leaf morphogenesis	GO:0009965	Biological Process	68%
Blast2go	plastoquinone biosynthetic process	GO:0010236	Biological Process	68%
Blast2go	protein binding	GO:0005515	Molecular Function	68%
Blast2go	homogentisate solanesyltransferase activity	GO:0010357	Molecular Function	68%
Blast2go	homogentisate geranylgeranyltransferase activity	GO:0010356	Molecular Function	68%
Blast2go	homogentisate farnesyltransferase activity	GO:0010355	Molecular Function	68%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	68%
Blast2go	nucleus	GO:0005634	Cellular Component	68%

Source	InterPros	Term	Type	Identity
Sma3	Importin-beta, N-terminal	IPR001494	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Exportin-1/Importin-beta-like	IPR013598	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q0WP44

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 217 aas, your sequence is shorter than subject: 111 - 1202

Fln protein: CSTSISQ*KWSSDTFASLFT*L*YL*VKNCPPLFWESWLGENLHALLVHCRQVLSASWVSLISEGRAKVPDSCCYSSALGLKVEVMEEKLLRDLTRETCALLAALASPGAN

Protein Length: 112

Fln nts: ACTGCTCTACTTCAATATCTCAATAGAAATGGAGTTCAGACACATTCGCCAGCTTATTCACATAGTTATAATACCTTTAGGTAAAAAATTGTCCACCATTATTTTGGGAGTCTTGGCTAGGGGAGAATTTGCATGCACTGCTTGTGCATTGTCGGCAAGTTCTCTCTGCTTCTTGGGTCAGCCTTATAAGTGAGGGAAGAGCGAAAGTTCCAGATTCTTGTTGCTATAGTTCTGCACTGGGTTTAAAGGTGGAGGTTATGGAAGAAAAGCTCCTAAGAGATTTGACTCGAGAGACTTGTGCTTTGTTGGCAGCATTGGCTTCCCCTGGGGCCAAC

Fln Alignment:

biogeco2_mira_rep_c19704___VKNCPPLFWESWLGENLHALLVHCRQVLSASWVSLISEGRAKVPDSCCYSSALGLKVEVMEEKLLRDLTRETCALLAALASPGAN
Q0WP44__________________VKSCPADMWESWLGVLLHPLFIHCQQALSSAWPGLLQEGRAKVPDLFGIQSGSDMKLEVMEEKLLRDLTREIATLFSTMASPGLN

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain