SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene19219

Length: 260 nt

UniGene Fasta

>biog2_v2.0_unigene19219
TTATCTGTTTCAGATATGGGGGAAAACAGCGATTACGAGTCCAGCGAGAGTGAGGAACAGTACTCTTCCGATGACAATAACAACAACAGTGATGATGGTCGTCGTAATGGCGATGACAATGTTGATCGCAAACGACGCTACGAAGAAGATTATGATGAAGAAGATGAAGAAGAAAAATCGGGGAAGGGGTTTCGGGCCAAGCGGCCAGCTAGAGGCAGAGACATTGTATTCAGGATTGTTGTGGCTCCGAACAAAATAGG

Ace file of the UniGene biog2_v2.0_unigene19219

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25219	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative KH domain containing protein (ISS) [Ostreococcus tauri] emb\|CAL53341.1\| putative KH domain containing protein (ISS) [Ostreococcus tauri]	-	-	7.0e-27	28%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Blast2go	kh domain-containing protein at4g18375-like	-	-	0.0	59%

Source	InterPros	Term	Type	Identity
Sma3	K Homology domain	IPR004087	-	-
Sma3	K Homology domain, type 1	IPR004088	-	-
Sma3		IPR018111	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NRZ8

Fln msg: Distance to subject end: 302 aas, your sequence is shorter than subject: 86 - 407

Fln protein: LSVSDMGENSDYESSESEEQYSSDDNNNNSDDGRRNGDDNVDRKRRYEEDYDEEDEEEKSGKGFRAKRPARGRDIVFRIVVAPNKI

Protein Length: 87

Fln nts: TTATCTGTTTCAGATATGGGGGAAAACAGCGATTACGAGTCCAGCGAGAGTGAGGAACAGTACTCTTCCGATGACAATAACAACAACAGTGATGATGGTCGTCGTAATGGCGATGACAATGTTGATCGCAAACGACGCTACGAAGAAGATTATGATGAAGAAGATGAAGAAGAAAAATCGGGGAAGGGGTTTCGGGCCAAGCGGCCAGCTAGAGGCAGAGACATTGTATTCAGGATTGTTGTGGCTCCGAACAAAATAGG

Fln Alignment:

biogeco2_mira_rep_c19687___GKGFRAKRPARGRDIVFRIVVAPNKI
A9NRZ8__________________GKGFRAKRAARGRDIVFRIVVASNKI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain