SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene19216

Length: 575 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene19216
GAATTGATGTTTCTCGGATACGGGAGAGACTCGAAGCTAATTGTATTGTCATAGTGAGCAACTTAGGCTACTCCAGCACTGGGCAAGTTCTAAATTGCAACACATATGAGGTAGCTACTGCCTGTGCACTGGCTCTTCAAGCAGACAAACTCATTTGCTTGGTTGATGGTCCTATTCTAGATGAAAATGGAAGGTTAATTCGTTACATGACTCTTCCTGAAGCAGACCAACTTATACGGAAGCGAGCCGAGCAGAGTGAAATTGCCGCAAAATATGTGCAAGCTGTTGCTGGCACTACTAGTAATCACGTGGAATATTCTGGTGTGAATGGAAGAGATACTTCATTTCAACAAAACTTTGGTGCTAGGAAAGCGTTTGGTGCAACATTTCACAATGGTGTTGGCTTTGATAGTGGAAATGGACTTGGGGCTGGAGGACAGGGGTTTGCTATTGGTGGGGAAGAGAGGCTGGGCAGATTAAATGCATACCTTTCAGAACTAGCGGCGGCAGTCTTCGTGTGCAGAGGTGGTGTACAGAGGGTTCATCTCTTGGATGGTACTGTTGGTGGAGCTATA

Ace file of the UniGene biog2_v2.0_unigene19216 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene346	1/2
SustainPine v2.0	sp_v2.0_unigene35921	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	N-acetyl-glutamate synthase n=1 Tax=Solanum lycopersicum RepID=C4NFG1_SOLLC	-	-	62%
FL-Next	tr=N-acetyl-glutamate synthase; Solanum lycopersicum (Tomato) (Lycopersicon esculentum).	-	-	68%
Blast2go	amino-acid acetyltransferase-like	-	-	79%

Source	ECs	Term	Type	e value	Identity
Blast2go	Acetylglutamate kinase.	EC:2.7.2.8	-	0.0	79%

Source	KEGGs	Term	Type	Identity
Blast2go	Arginine and proline metabolism	00330		79%
Blast2go	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064		79%
Blast2go	Metabolic pathways	01100		79%
Blast2go	Biosynthesis of secondary metabolites	01110		79%
Blast2go	Amino-acid N-acetyltransferase.	EC:2.3.1.1	-	79%

Source	KEGGs	Term	Identity
Blast2go	Arginine and proline metabolism	00330	79%
Blast2go	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	79%
Blast2go	Metabolic pathways	01100	79%
Blast2go	Biosynthesis of secondary metabolites	01110	79%

Source	GOs	Term	Type	Identity
Blast2go	arginine biosynthetic process	GO:0006526	Biological Process	79%
Blast2go	acetylglutamate kinase activity	GO:0003991	Molecular Function	79%
Blast2go	acetyl-CoA:L-glutamate N-acetyltransferase activity	GO:0004042	Molecular Function	79%
Blast2go	plastid	GO:0009536	Cellular Component	79%
Blast2go	mitochondrion	GO:0005739	Cellular Component	79%

Source	InterPros	Term	Type	Identity
Sma3	GNAT domain	IPR000182	-	-
Sma3	Aspartate/glutamate/uridylate kinase	IPR001048	-	-
Sma3	Amino-acid N-acetyltransferase (ArgA)	IPR010167	-	-
Sma3	Acyl-CoA N-acyltransferase	IPR016181	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: C4NFG1

Fln msg: Distance to subject end: 180 aas, your sequence is shorter than subject: 191 - 603

Fln protein: IDVSRIRERLEANCIVIVSNLGYSSTGQVLNCNTYEVATACALALQADKLICLVDGPILDENGRLIRYMTLPEADQLIRKRAEQSEIAAKYVQAVAGTTSNHVEYSGVNGRDTSFQQNFGARKAFGATFHNGVGFDSGNGLGAGGQGFAIGGEERLGRLNAYLSELAAAVFVCRGGVQRVHLLDGTVGGAI

Protein Length: 192

Fln nts: GAATTGATGTTTCTCGGATACGGGAGAGACTCGAAGCTAATTGTATTGTCATAGTGAGCAACTTAGGCTACTCCAGCACTGGGCAAGTTCTAAATTGCAACACATATGAGGTAGCTACTGCCTGTGCACTGGCTCTTCAAGCAGACAAACTCATTTGCTTGGTTGATGGTCCTATTCTAGATGAAAATGGAAGGTTAATTCGTTACATGACTCTTCCTGAAGCAGACCAACTTATACGGAAGCGAGCCGAGCAGAGTGAAATTGCCGCAAAATATGTGCAAGCTGTTGCTGGCACTACTAGTAATCACGTGGAATATTCTGGTGTGAATGGAAGAGATACTTCATTTCAACAAAACTTTGGTGCTAGGAAAGCGTTTGGTGCAACATTTCACAATGGTGTTGGCTTTGATAGTGGAAATGGACTTGGGGCTGGAGGACAGGGGTTTGCTATTGGTGGGGAAGAGAGGCTGGGCAGATTAAATGCATACCTTTCAGAACTAGCGGCGGCAGTCTTCGTGTGCAGAGGTGGTGTACAGAGGGTTCATCTCTTGGATGGTACTGTTGGTGGAGCTATA

Fln Alignment:

biogeco2_mira_rep_c19679___IDVSRIRERLEANCIVIVSNLGYSSTGQVLNCNTYEVATACALALQADKLICLVDGPILDENGRLIRYMTLPEADQLIRKRAEQSEIAAKYVQAVAGTTSNHVEYSGVNGRDTSFQQNFGARKAFGATFHNGVGFDSXXXXXXXXXXXXXXGEERLGRLNAYLSELAAAVFVCRGGVQRVHLLDGTVGGAI
C4NFG1__________________IDVSRIRERLDQDSIVLLSNLGYSSSGEVLNCNTYEVATACALALGAEKLICIIDGPILDESGRLIRFLTLQDADMLVRKRAEQSEAAANYVKAVSQEDFNCLGHNGSNGSISSYNMNGFSQKY--SVFQNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRGGVQRVHLLDGTIGGVL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain