SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene19129

Length: 425 nt

UniGene Fasta

>biog2_v2.0_unigene19129
GCTTTAACTGGAGCAGAAAAACGTTACAAGCTTCCTGAGCAACTGAAAATTTACACATTGATTTGTGAGTCAAACTTGAAGCCACTGTATTTAGTGGCACTGTTGCAGCTTTTGAAAGGGGAGCAGACCATTGTTTTCACATCTTCTGTTGTTTCTACCCATAGGTTATGTGCCTTATTGAACTGTTTCGAAGGGCTGGCCTTAAGGATAATTGAATATTCAAGCTTACAACATCAATCTTCACGAAGTAAAGCGTTGGATGCATTTAGGGCAGGAGATGTTGAAGTGCTAGTTGCTTCTGATGCAATGACCCGTGGGATGGATGTGGAAGGTGTGATGAATGTTGTGAACTATGACATGCCTTCATATGCAAAGACATACGTTCACCGTGCTGGTCGTACTGCCCGGGCAGGGCGGTCAGGAAG

Ace file of the UniGene biog2_v2.0_unigene19129

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18994	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	putative DEAD box-like RNA helicase [Oryza sativa Japonica Group] dbj\|BAD19277.1\| putative DEAD box-like RNA helicase [Oryza sativa Japonica Group]	-	-	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	33%
Blast2go	dead box-like rna helicase	-	-	73%

Source	InterPros	Term	Type	Identity
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKW8

Fln msg: Distance to subject end: 309 aas, your sequence is shorter than subject: 141 - 802

Fln protein: ALTGAEKRYKLPEQLKIYTLICESNLKPLYLVALLQLLKGEQTIVFTSSVVSTHRLCALLNCFEGLALRIIEYSSLQHQSSRSKALDAFRAGDVEVLVASDAMTRGMDVEGVMNVVNYDMPSYAKTYVHRAGRTARAGRSG

Protein Length: 142

Fln nts: GCTTTAACTGGAGCAGAAAAACGTTACAAGCTTCCTGAGCAACTGAAAATTTACACATTGATTTGTGAGTCAAACTTGAAGCCACTGTATTTAGTGGCACTGTTGCAGCTTTTGAAAGGGGAGCAGACCATTGTTTTCACATCTTCTGTTGTTTCTACCCATAGGTTATGTGCCTTATTGAACTGTTTCGAAGGGCTGGCCTTAAGGATAATTGAATATTCAAGCTTACAACATCAATCTTCACGAAGTAAAGCGTTGGATGCATTTAGGGCAGGAGATGTTGAAGTGCTAGTTGCTTCTGATGCAATGACCCGTGGGATGGATGTGGAAGGTGTGATGAATGTTGTGAACTATGACATGCCTTCATATGCAAAGACATACGTTCACCGTGCTGGTCGTACTGCCCGGGCAGGGCGGTCAGGAAG

Fln Alignment:

biogeco2_mira_rep_c19559___EKRYKLPEQLKIYTLIC--ESNLKPLYLVALLQLL-KGEQTIVFTSSVVSTHRLCALLNCFEGLALRIIEYSSLQHQSSRSKALDAFRAGDVEVLVASDAMTRGMDVEGVMNVVNYDMPSYAKTYVH
B8LKW8__________________ENEEKLAEGIKLYAVATTTSSNSKRSILGDLITVFAKGGKTIVFTQTKRDADEIS--LGLSSTIACEALHGDISQHQ--RERTLAGFREGKFSALVATDVAARGLDITNVDLVIHYEFPNDPETFVH

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain