SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene19058

Length: 2287 nt

UniGene Fasta

>biog2_v2.0_unigene19058
CTCGCGCAACCATTTGTTTGATTCTCAACGTAGTTTAGACGGACGTGCCTCTTTATATTTTTGGTTCTCTGAGTTCCTTCCAGCGCTGTGCTGTCAGCTTTGCTGCGATTATTGTTCTATTTTTTGTTTCTGAGCATTCAACGGTTTTCTATTTTGGAAAATGGCAAAGGGAGAAGGCCCCGCTATCGGAATCGATCTTGGAACCACATATTCCTGCGTAGGAGTGTGGCAACATGACCGAGTGGAGATTATTGCCAACGATCAGGGAAATCGGACCACTCCATCTTATGTAGCTTTCACCGACACAGAGCGGCTGATCGGAGATTCTCCGATCCAACAGTCCAGAATGACATGAAGTTGTGGCCCTTCAAAGTCATTTCTGGGCCAGCGGAGAAGCCTATGATTGTTGTTACTTACAAAGGAGAAGAAAAGCAATTCGCTGCAGAGGAAATTTCTTCGATGGTTCTGACTAAAATGAAAGAGATTGCTGAAGCGTATCTTGGAACCACCATCAAGAATGCTGTTGTTACAGTCCCTGCATATTTCAATGACTCTCAGAGGCAGGCTACAAAGGATGCTGGCGTCATTTCTGGACTAAATGTGATGAGAATCATCAACGAACCAACTGCAGCTGCAATTGCTTATGGGCTGGACAAGAAGGCTAGCTCTGTTGGTGAGAAAAATGTTTTGATTTTTGATCTAGGAGGGGGGACTTTTGATGTTTCTCTATTAACTATTGAAGAGGGTATCTTTGAGGTCAAGGCCACGGCAGGAGATACCCATTTGGGTGGTGAAGACTTTGATAATCGGTTAGTTAACCATTTTACTCAGGAATTTAAAAGAAATATAAGAAAGATCTCGGTAGCAGTGCAAGAGCCCTTAGGAGGTTGAGAACAGCCTGTGAAAGGGCTAAGAGAACGTTGTCTTCCACTGCTCAGACTACCATTGAGATTGATTCTTTGTACGAAGGAATTGATTTTTACTCCACCATTACTAGGGCTAGATTTGAGGAGCTCAACATGGATCTGTTTAGGAAATGCATGGAGCCTGTTGAGAAGTGTTTGAGGGATGCCAAGATGGATAAGAGCAGTGTTCATGATGTTGTGCTTGTGGGAGGATCTACCCGTATCCCTAAAGTGCAGCAATTGTTGCAGGATTTCTTCAATGGAAAGGAGCTCTGCAAGAGTATCAATCCCGATGAAGCTGTTGCTTATGGTGCTGCTGTTCAAGCTGCAATTCTAAGTGGAGAAGGAAATGAGAAGGTGCAAGACCTTTTGCTTCTTGACGTTACTCCCCTGTCACTAGGATTGGAAACTGCGGGAGGAGTGATGACTGTTTTGATCCCGAGGAACACAACGATTCCTACGAAGAAAGAACAAGTCTTCTCCACATACTCTGACAATCAGCCTGGTGTTTTGATCCAAGTATTTGAAGGTGAAAGAGCAAGAACTAAGGACAACAATCTTTTGGGTAAGTTTGAGTTGTCTGGTATCCCTCCTGCTCCAAGGGGTGTGCCTCAGATCACTGTTTGCTTTGACATTGATGCCAATGGTATCCTGAACGTCTCTGCTGAGGATAAAACGCTGGGCAGAAAAACAAGATCACCATTACCAATGACAAGGGCAGGCTAAGCAAGGATGAGATAGAAAAGATGGTTCAGGATGCAGAGAAATACAAGGCCGAGGATGAAGAACTGAAATTGAAGGTAGAAGCCAAAAATTCTCTAGAGAACTATGCATACAACATGAGGAATACCATCAAAGATGATAAGATTGCAGGAAAGTTGGACCCTGCTGACAAGAAGAAAATCGAGGATGCAGTTGATGGAATTATCAGCTGGTTGGATGGAAACCAGTTGGCCGAGAAGGAAGAGTTTGAGGACAAATTGAAAGAGCTGGAGTCTACTTGCAATCCTATCATTGCAAAAATGTACCAGGGTGAAGGTGGTGCGGGATTTCCAGGTGCTGATGCTTTTGGTGGAGCTTCTGGAGCTGGCGACGAGGGTGCAAGTGGCCCTGGTCCCAAGATCGAGGAAGTGGACTAGATATATTTCTTCAGCACCTTCTATGTGTTTTTTTTGTTATTTCATTTGAATTGCTCGGGCTGGAATTTTAGAACTTTAAAATGTGGCCATTTTTGTCAGCCTCAGGATTGTTTCTCTTTGTAGTAGGTATGTAGTATTTTGAACTCTCTTATGCAGAGAGTCGTCAAACCGTATATTTCAACTGAAAGTGTTTTGTCATTTCAGAATATCTAGAAATATAATGCGCCCGGATTTTTACTGGAC

Ace file of the UniGene biog2_v2.0_unigene19058

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16232	3/125
SustainPine v2.0	sp_v2.0_unigene22760	113/125
SustainPine v2.0	sp_v2.0_unigene82399	7/125
SustainPine v2.0	sp_v2.0_unigene82702	2/125

Source	Descriptions	Term	Type	Identity
AutoFact	Heat shock cognate 70 kDa protein n=7 Tax=Magnoliophyta RepID=HSP7C_PETHY	-	-	86%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	76%
Blast2go	heat shock protein 70	-	-	96%

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein 70, conserved site	IPR018181	-	-
Sma3	Heat shock protein Hsp70	IPR001023	-	-
Sma3	Heat shock protein 70	IPR013126	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LRY5

Fln msg: ERROR#3, very serious frame error, Overlapping hits, possible frame ERROR between 397 and 295, and overlapping frame ERROR between 855 and 840,

Fln protein: MAKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxMIVVTYKGEEKQFAAEEISSMVLTKMKEIAEAYLGTTIKNAVVTVPAYFNDSQRQATKDAGVISGLNVMRIINEPTAAAIAYGLDKKASSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFTQExxxxxxxxLGSSARALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVFEGERARTKDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTLGRKTRSPLPMTRAG*ARMR*KRWFRMQRNTRPRMKN*N*R*KPKIL*RTMHTT*GIPSKMIRLQESWTLLTRRKSRMQLMELSAGWMETSWPRRKSLRTN*KSWSLLAILSLQKCTRVKVVRDFQVLMLLVELLELATRVQVALVPRSRKWTRYISSAPSMCFFCYFI*

Protein Length: 646

Fln nts: CTCGCGCAACCATTTGTTTGATTCTCAACGTAGTTTAGACGGACGTGCCTCTTTATATTTTTGGTTCTCTGAGTTCCTTCCAGCGCTGTGCTGTCAGCTTTGCTGCGATTATTGTTCTATTTTTTGTTTCTGAGCATTCAACGGTTTTCTATTTTGGAAA_-_ATGGCAAAGGGAGAAGGCCCCGCTATCGGAATCGATCTTGGAACCACATATTCCTGCGTAGGAGTGTGGCAACATGACCGAGTGGAGATTATTGCCAACGATCAGGGAAATCGGACCACTCCATCTTATGTAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxATGATTGTTGTTACTTACAAAGGAGAAGAAAAGCAATTCGCTGCAGAGGAAATTTCTTCGATGGTTCTGACTAAAATGAAAGAGATTGCTGAAGCGTATCTTGGAACCACCATCAAGAATGCTGTTGTTACAGTCCCTGCATATTTCAATGACTCTCAGAGGCAGGCTACAAAGGATGCTGGCGTCATTTCTGGACTAAATGTGATGAGAATCATCAACGAACCAACTGCAGCTGCAATTGCTTATGGGCTGGACAAGAAGGCTAGCTCTGTTGGTGAGAAAAATGTTTTGATTTTTGATCTAGGAGGGGGGACTTTTGATGTTTCTCTATTAACTATTGAAGAGGGTATCTTTGAGGTCAAGGCCACGGCAGGAGATACCCATTTGGGTGGTGAAGACTTTGATAATCGGTTAGTTAACCATTTTACTCAGGAATTxxxxxxxxxxxxxxxxxxxxxTCTCGGTAGCAGTGCAAGAGCCCTTAGGAGGTTGAGAACAGCCTGTGAAAGGGCTAAGAGAACGTTGTCTTCCACTGCTCAGACTACCATTGAGATTGATTCTTTGTACGAAGGAATTGATTTTTACTCCACCATTACTAGGGCTAGATTTGAGGAGCTCAACATGGATCTGTTTAGGAAATGCATGGAGCCTGTTGAGAAGTGTTTGAGGGATGCCAAGATGGATAAGAGCAGTGTTCATGATGTTGTGCTTGTGGGAGGATCTACCCGTATCCCTAAAGTGCAGCAATTGTTGCAGGATTTCTTCAATGGAAAGGAGCTCTGCAAGAGTATCAATCCCGATGAAGCTGTTGCTTATGGTGCTGCTGTTCAAGCTGCAATTCTAAGTGGAGAAGGAAATGAGAAGGTGCAAGACCTTTTGCTTCTTGACGTTACTCCCCTGTCACTAGGATTGGAAACTGCGGGAGGAGTGATGACTGTTTTGATCCCGAGGAACACAACGATTCCTACGAAGAAAGAACAAGTCTTCTCCACATACTCTGACAATCAGCCTGGTGTTTTGATCCAAGTATTTGAAGGTGAAAGAGCAAGAACTAAGGACAACAATCTTTTGGGTAAGTTTGAGTTGTCTGGTATCCCTCCTGCTCCAAGGGGTGTGCCTCAGATCACTGTTTGCTTTGACATTGATGCCAATGGTATCCTGAACGTCTCTGCTGAGGATAAAACGCTGGGCAGAAAAACAAGATCACCATTACCAATGACAAGGGCAGGCTAAGCAAGGATGAGATAGAAAAGATGGTTCAGGATGCAGAGAAATACAAGGCCGAGGATGAAGAACTGAAATTGAAGGTAGAAGCCAAAAATTCTCTAGAGAACTATGCATACAACATGAGGAATACCATCAAAGATGATAAGATTGCAGGAAAGTTGGACCCTGCTGACAAGAAGAAAATCGAGGATGCAGTTGATGGAATTATCAGCTGGTTGGATGGAAACCAGTTGGCCGAGAAGGAAGAGTTTGAGGACAAATTGAAAGAGCTGGAGTCTACTTGCAATCCTATCATTGCAAAAATGTACCAGGGTGAAGGTGGTGCGGGATTTCCAGGTGCTGATGCTTTTGGTGGAGCTTCTGGAGCTGGCGACGAGGGTGCAAGTGGCCCTGGTCCCAAGATCGAGGAAGTGGACTAGATATATTTCTTCAGCACCTTCTATGTGTTTTTTTTGTTATTTCATTTGA___ATTGCTCGGGCTGGAATTTTAGAACTTTAAAATGTGGCCATTTTTGTCAGCCTCAGGATTGTTTCTCTTTGTAGTAGGTATGTAGTATTTTGAACTCTCTTATGCAGAGAGTCGTCAAACCGTATATTTCAACTGAAAGTGTTTTGTCATTTCAGAATATCTAGAAATATAATGCGCCCGGATTTTTACTGGAC

Fln Alignment:

biogeco2_mira_rep_c19441___MAKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDSPIQQSRM--T*SCxxxxxxxxxxxxDPTVQNDMKLWPFKVISGPAEKPMIVVTYKGEEKQFAAEEISSMVLTKMKEIAEAYLGTTIKNAVVTVPAYFNDSQRQATKDAGVISGLNVMRIINEPTAAAIAYGLDKKASSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFTQEFKxxxxxDLGXXXXXXXXXXTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVFEGERARTKDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTLGRKTR
B8LRY5__________________MAKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVxxxxxxxxxxxxDPTVQNDMKLWPFKVISGPAEKPMIVVSYKGEDKQFAAEEISSMVLTKMKEIAEAYLGTTIKNAVVTVPAYFNDSQRQATKDAGVISGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFTQEFKxxxxxDLSSSARALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTIHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVFEGERARTKDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNK

SNPs (tot: 5)

Position	C %	G %	T %	Probability
700		90	10	0.90298
704	10		90	0.90298
715		75	25	0.99649
1989	3		96	0.982166
1995	1		89	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain