SustainPineDB

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Assembly info
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene19056

Length: 380 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene19056
ATGGGATTCTGTTTTGAAACATGTCTTAGAAAACTCCATAAGTGGTAAAAGATTTGCCAATTCTGATTCCGAATCCTCCTACAAGATAGGAATCTTGGTGCAATTAGAAGCTATCGGTTTTGAATCTCAGAATGATCATGCACAGCTTGCCCTCCAGAAAGCTGGAGAAACTGAAACCAAGTATAACACAAATGTTGATAGGCTAGCTATTGAGTTAAGCCTAAAACAAAGAACTATGGCAGAGCTTGAATGGTATAAAGAGAGTTGTGAGAAGGAGGGTGGCGTCGGATATTATAATACCTTTAAGCACCAAGACAAGATGGATATCCATGCTGATGGCAATAAGGATGAAGCTCGCTAGGTTTTGGGATGACATTATT

Ace file of the UniGene biog2_v2.0_unigene19056 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15058	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	72%
Blast2go	phytoalexin-deficient 4-1 protein	-	-	69%

Source	InterPros	Term	Type	e value	Identity
Sma3	Lipase, class 3	IPR002921	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NW04

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 174 aas, your sequence is shorter than subject: 120 - 616

Fln protein: WDSVLKHVLENSISGKRFANSDSESSYKIGILVQLEAIGFESQNDHAQLALQKAGETETKYNTNVDRLAIELSLKQRTMAELEWYKESCEKEGGVGYYNTFKHQDKMDIHADGNKDEAR*

Protein Length: 121

Fln nts: ATGGGATTCTGTTTTGAAACATGTCTTAGAAAACTCCATAAGTGGTAAAAGATTTGCCAATTCTGATTCCGAATCCTCCTACAAGATAGGAATCTTGGTGCAATTAGAAGCTATCGGTTTTGAATCTCAGAATGATCATGCACAGCTTGCCCTCCAGAAAGCTGGAGAAACTGAAACCAAGTATAACACAAATGTTGATAGGCTAGCTATTGAGTTAAGCCTAAAACAAAGAACTATGGCAGAGCTTGAATGGTATAAAGAGAGTTGTGAGAAGGAGGGTGGCGTCGGATATTATAATACCTTTAAGCACCAAGACAAGATGGATATCCATGCTGATGGCAATAAGGATGAAGCTCGCTAGGTTTTGGGATGACATTATT

Fln Alignment:

biogeco2_mira_rep_c19436___WDSVLKHVLENSISGKRFANSDSESSYKIGILVQLEAIGFESQNDHAQLALQKAGETETKYNTNVDRLAIELSLKQRTMAELEWYKESCEKEGGVGYYNTFKHQD
A9NW04__________________YGAVLKHVIENSISGKRFANPDSKSSYEMGISLQLEAIGVGAQNDHAQFALRRAGETEDNYNTNVDKLAIELSLKQSSMAELEWYKERCEKEDGITYYDSFKKQN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain