SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene19051

Length: 522 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene19051
GCTTTGGAACTTCTTACTGTTTTGCTGGAGAATCCTACAGACGATAGTGTTGAGGTTGCTGTTGGATTTGTAAAGGAATGCGGGTCCATGCTTCAAGACCTATCACCTCAAGGCCTCTATGGAATTTTTGAGCGATTTAGGGGTATTCTTCATGAGGGAGAAATTGACAAACGAGTGCAGTTTTCGATTGAAGGACTCTTTGCAATTCGCAAAGCCAATTTCCAGGGTTATCCTGCTATTCGTCCAGAACTGGATCTTGTGGAGCAAGAAGATCAGTTTACCCATGAATTTTCCCTAGAAGATGAGCTTGATCAAGAAGTTGGCCTCGATATTTTCAAGCCAGATCCAGATTTTTTGGAGCACGAGAAAGCTTATGAAAACCTTAAGAAAGATATCCTTGGAGAGGAATCTTCAGATGAAGTAGAAGGAGAGAATGATTCAGGTCAGGAGTCGGATGAAGATGAAGATGAAGAGGAAGAACAAGAGGAACAGCTCCGCATACAGGATGAAACTGAGACAAAC

Ace file of the UniGene biog2_v2.0_unigene19051 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3577	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Os12g0256300 protein n=6 Tax=Oryza sativa RepID=Q2QUQ9_ORYSJ	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Oryza sativa subsp. indica (Rice).	-	-	77%
Blast2go	pre-mrna-splicing factor cwc-22	-	-	91%

Source	GOs	Term	Type	Identity
Blast2go	RNA metabolic process	GO:0016070	Biological Process	91%
Blast2go	translation	GO:0006412	Biological Process	91%
Blast2go	RNA binding	GO:0003723	Molecular Function	91%
Blast2go	membrane	GO:0016020	Cellular Component	91%
Blast2go	nucleus	GO:0005634	Cellular Component	91%
Blast2go	cytosol	GO:0005829	Cellular Component	91%
Blast2go	plastid	GO:0009536	Cellular Component	91%

Source	InterPros	Term	Type	Identity
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	MIF4G-like, type 3	IPR003890	-	-
Sma3	Initiation factor eIF-4 gamma, MA3	IPR003891	-	-
Sma3	Metallophosphoesterase domain	IPR004843	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Purple acid phosphatase, N-terminal	IPR015914	-	-
Sma3	MIF4-like, type 1/2/3	IPR016021	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A2ZJG3

Fln msg: Distance to subject end: 247 aas, your sequence is shorter than subject: 174 - 556

Fln protein: ALELLTVLLENPTDDSVEVAVGFVKECGSMLQDLSPQGLYGIFERFRGILHEGEIDKRVQFSIEGLFAIRKANFQGYPAIRPELDLVEQEDQFTHEFSLEDELDQEVGLDIFKPDPDFLEHEKAYENLKKDILGEESSDEVEGENDSGQESDEDEDEEEEQEEQLRIQDETETN

Protein Length: 175

Fln nts: GCTTTGGAACTTCTTACTGTTTTGCTGGAGAATCCTACAGACGATAGTGTTGAGGTTGCTGTTGGATTTGTAAAGGAATGCGGGTCCATGCTTCAAGACCTATCACCTCAAGGCCTCTATGGAATTTTTGAGCGATTTAGGGGTATTCTTCATGAGGGAGAAATTGACAAACGAGTGCAGTTTTCGATTGAAGGACTCTTTGCAATTCGCAAAGCCAATTTCCAGGGTTATCCTGCTATTCGTCCAGAACTGGATCTTGTGGAGCAAGAAGATCAGTTTACCCATGAATTTTCCCTAGAAGATGAGCTTGATCAAGAAGTTGGCCTCGATATTTTCAAGCCAGATCCAGATTTTTTGGAGCACGAGAAAGCTTATGAAAACCTTAAGAAAGATATCCTTGGAGAGGAATCTTCAGATGAAGTAGAAGGAGAGAATGATTCAGGTCAGGAGTCGGATGAAGATGAAGATGAAGAGGAAGAACAAGAGGAACAGCTCCGCATACAGGATGAAACTGAGACAAAC

Fln Alignment:

biogeco2_mira_c19428___ALELLTVLLENPTDDSVEVAVGFVKECGSMLQDLSPQGLYGIFERFRGILHEGEIDKRVQFSIEGLFAIRKANFQGYPAIRPELDLVEQEDQFTHEFSLEDELDQEVGLDIFKPDPDFLEHEKAYENLKKDILGEESSDEVXXXXXXXXXXXXXXXXXXXXXEQLRIQDETETN
A2ZJG3__________________ALELLTVLLENPTDDSVEVAVGFVKECGAMLQDLSPQGLHAIFERFRGILHEGEIDKRVQFLIEGLFAIRKAKFQGFPAIRPELDLVEQEDQFTHEISLEDELDPETNLNVFRANPNFAEDEKAYENLKRSILGAESSDDEEGSDDASDEDAEEESDDEEDEEQMEIRDQTETN

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
64		33		66	0.997464
115		33		66	0.997452
196	33		66		0.997452
416	66	33			0.997452
417		33	66		0.997452
418	33		66		0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
50	69	TCTTCA TCTTCA TCTTCA TC	20

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain