SustainPineDB

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Assembly info
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene19049

Length: 384 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene19049
ACGCTACGAAGTTAGAGAGAAAAAATGTACAAAGAAGAAACCAAGGGGTCTGAAGGCAATGGAAAGTTCAGAGAGCGATTCAGACTGATGTGGCTAGGCATGGACAAATATCCAAGTTCTGCCACTTTTGCCATGTTTGTCATTGTGCAGACTGTTTGCTCATTAACTCAATGGATCCCAGCTAAGTCTTTGTACTCTGTAAGATGTCGGTAGATTGATTGCAAATTTTTGGAGGAGAGTTTTGCTGGAAAGCTGCTCTGCAGTTGCAATCAATGTCGGATTTACTTTGGCTATCTGTTTCCAATGATATGGTAAGATTTGCTTTGAAAATCTTGTATAAGCCTACATCTGTAGGTCTGTATGTCATTGTGGCCATTGGTGGCC

Ace file of the UniGene biog2_v2.0_unigene19049 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3417	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF1639 domain containing protein	-	-	2.0e-18	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%
Blast2go	protein	-	-	0.0	58%

Source	InterPros	Term	Type	e value	Identity
Sma3	Protein of unknown function DUF1639	IPR012438	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NW57

Fln msg: your sequence is shorter than subject: 29 - 347

Fln protein: RYEVREKKCTKKKPRGLKAMESSESDSD*

Protein Length: 30

Fln nts: ACGCTACGAAGTTAGAGAGAAAAAATGTACAAAGAAGAAACCAAGGGGTCTGAAGGCAATGGAAAGTTCAGAGAGCGATTCAGACTGA___TGTGGCTAGGCATGGACAAATATCCAAGTTCTGCCACTTTTGCCATGTTTGTCATTGTGCAGACTGTTTGCTCATTAACTCAATGGATCCCAGCTAAGTCTTTGTACTCTGTAAGATGTCGGTAGATTGATTGCAAATTTTTGGAGGAGAGTTTTGCTGGAAAGCTGCTCTGCAGTTGCAATCAATGTCGGATTTACTTTGGCTATCTGTTTCCAATGATATGGTAAGATTTGCTTTGAAAATCTTGTATAAGCCTACATCTGTAGGTCTGTATGTCATTGTGGCCATTGGTGGCC

Fln Alignment:

biogeco2_mira_c19426___RYEVREKKCTKKKPRGLKAM
A9NW57__________________RYEVREKKCTKKKPRGLKAM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain