SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene19037

Length: 451 nt

UniGene Fasta

>biog2_v2.0_unigene19037
AATTTGAAGATGGGTCGACAAGGGGTTCTGGTGGGGGTAGCTGCCCATCTTCAATGCGCTCGTCTCCTAATCACAGCGGAGTGCTTGTTGGAATGAAGGCAGTTTCTCCGAGTGGAAGCACCATGGAGGAACTGCAGAATGCCATTCAAGGAGCCATTGCCCACTGCAAGAAGTCCAATGCCATCACCACTGAGACCCAAAACTCTAAAGATTCCAGTAACTCTTCTTAACAAGAACCAAGGACCTGTGCAGCGGACAGAAGCGGTTGGGTTTTATACATAGGTGGTGCCAATGTGGATCCTTTTCAGAAATTGTACAGAAACTGTACAGTGCTGTTTCTGTTTTTGCACAGAGGATGCTTTTTGTATCAGATATTACTATATAATATAATTATTCAGAGGCAGGGATTGCAGAGGCAACAGATTACATAATCAATAATAGAATATAGTAT

Ace file of the UniGene biog2_v2.0_unigene19037

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene33533	2/3
SustainPine v2.0	sp_v2.0_unigene39431	1/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%
Blast2go	probable membrane-associated kinase regulator 1-like	-	-	5.25155e-32	63%

Source	GOs	Term	Type	e value	Identity
Blast2go	negative regulation of phosphorylation	GO:0042326	Biological Process	5.25155e-32	63%
Blast2go	response to brassinosteroid stimulus	GO:0009741	Biological Process	5.25155e-32	63%
Blast2go	kinase inhibitor activity	GO:0019210	Molecular Function	5.25155e-32	63%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWX2

Fln msg: your sequence is shorter than subject: 76 - 374

Fln protein: FEDGSTRGSGGGSCPSSMRSSPNHSGVLVGMKAVSPSGSTMEELQNAIQGAIAHCKKSNAITTETQNSKDSSNSS*

Protein Length: 77

Fln nts: AATTTGAAGATGGGTCGACAAGGGGTTCTGGTGGGGGTAGCTGCCCATCTTCAATGCGCTCGTCTCCTAATCACAGCGGAGTGCTTGTTGGAATGAAGGCAGTTTCTCCGAGTGGAAGCACCATGGAGGAACTGCAGAATGCCATTCAAGGAGCCATTGCCCACTGCAAGAAGTCCAATGCCATCACCACTGAGACCCAAAACTCTAAAGATTCCAGTAACTCTTCTTAA___CAAGAACCAAGGACCTGTGCAGCGGACAGAAGCGGTTGGGTTTTATACATAGGTGGTGCCAATGTGGATCCTTTTCAGAAATTGTACAGAAACTGTACAGTGCTGTTTCTGTTTTTGCACAGAGGATGCTTTTTGTATCAGATATTACTATATAATATAATTATTCAGAGGCAGGGATTGCAGAGGCAACAGATTACATAATCAATAATAGAATATAGTAT

Fln Alignment:

biogeco2_mira_rep_c19399___RGSGGGSCPSSMRSSPNHSGVLVGMKAVSPSGSTMEELQNAIQGAIAHCKKSNAITTETQ
A9NWX2__________________RSSGGVSCPSSMRSSPNHSGVLVGMKAVSSSGSTMEELQNAIQGAIAHCKKSNAITTETQ

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
172			66	33	0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain