SustainPineDB

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Assembly info
Unigenes
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ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene19025

Length: 353 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene19025
CCTCTCTGAATTGGGTCTGCGATTTACCAATCCTGCATTCGTGTTGCGAACTCCGATCCCGTTTCTGCGAAATTGAGTTGTTTTCTGAAGTGGGTTTGTAGGAGAAAGAATTCTTGAAAATGGGGTGCCTGGGATGCCGAGTATTCGTGGCATTTCTGCTGAAGTTTTTGAATTTCATTCAAGCTTTCATTGGAGCGTCGATGATTCTGTATGCAGTATGGATGCTCAACCACTGGAATTCTCATGTTCGCCCTCCTCCGATTGCACCTGCACCCAACAATGTTGATGGGTATAATTTACCTGCAGAATTAATGTCCCTTCATTCCTCAGTGGGGCAACAACTGGATGTTCCG

Ace file of the UniGene biog2_v2.0_unigene19025 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4051	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	tetraspanin family protein	-	-	60%

Source	GOs	Term	Type	e value	Identity
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	0.0	60%
Blast2go	integral to membrane	GO:0016021	Cellular Component	0.0	60%

Source	InterPros	Term	Type	e value	Identity
Sma3	Tetraspanin	IPR018499	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAB0

Fln msg: Distance to subject end: 234 aas, your sequence is shorter than subject: 78 - 312

Fln protein: MGCLGCRVFVAFLLKFLNFIQAFIGASMILYAVWMLNHWNSHVRPPPIAPAPNNVDGYNLPAELMSLHSSVGQQLDVP

Protein Length: 79

Fln nts: CCTCTCTGAATTGGGTCTGCGATTTACCAATCCTGCATTCGTGTTGCGAACTCCGATCCCGTTTCTGCGAAATTGAGTTGTTTTCTGAAGTGGGTTTGTAGGAGAAAGAATTCTTGAAA_-_ATGGGGTGCCTGGGATGCCGAGTATTCGTGGCATTTCTGCTGAAGTTTTTGAATTTCATTCAAGCTTTCATTGGAGCGTCGATGATTCTGTATGCAGTATGGATGCTCAACCACTGGAATTCTCATGTTCGCCCTCCTCCGATTGCACCTGCACCCAACAATGTTGATGGGTATAATTTACCTGCAGAATTAATGTCCCTTCATTCCTCAGTGGGGCAACAACTGGATGTTCCG

Fln Alignment:

biogeco2_mira_rep_c19375___MGCLGCRVFVAFLLKFLNFIQAFIGASMILYAVWMLNHWNSHVRPPPIAPAPNNVDGYNLPAELMSLHSSVGQQLDVP
D5AAB0__________________MGCQGCRVFVAFLLKFLNFIQAFIGASMILYAIWMLNRWNSHVRPPPIAPAPNNVDGYNLPAELMSLHSSVGQQLEVP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain