SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene19017

Length: 419 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene19017
TGCGTCCTGATCTGAAGCGTGGAAACTTCTCAGAAGAAGAAGACGAACTCATCATCAAACTCCACTCCCTACTCGGCAACAAGTGGTCTCTTATTGCAGGCAGATTGCCTGGGCGGACGGACAACGAGATAAAGAACTACTGGAATACTCACATCAAGAGAAAATTGCTAAACAGGGGACTCGACCCCCAGTCTCATCGCCCCCTCGGCCAGCCGCACAACAGCAACACTATCTGCCCCTCTGTGCCCGCCCTCGAGCACGAAATTCTGGCGTTCCAGAGGCCAAGAACGCCGGAGATAGCAGATTTCTTTCAATACGAACGCTCTGAAAGCTCGCCGATGGAACCGGCCACTTCTAAAGACGCGGAAGAGCATCCCGACCTCAATCTTGATTTGTGCATCAGCTTGCCAGTTCATTCG

Ace file of the UniGene biog2_v2.0_unigene19017 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1688	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	R2R3-Myb5 transcription factor (Fragment) n=2 Tax=Pinus RepID=B1PPT8_PINPS	-	-	99%
FL-Next	tr=R2R3-MYB transcription factor MYB5; Picea glauca (White spruce) (Pinus glauca).	-	-	90%
Blast2go	myb-like protein	-	-	86%

Source	GOs	Term	Type	e value	Identity
Blast2go	DNA binding	GO:0003677	Molecular Function	0.0	86%
Blast2go	nucleus	GO:0005634	Cellular Component	0.0	86%

Source	InterPros	Term	Type	Identity
Sma3		IPR012287	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-
Sma3		IPR014778	-	-
Sma3	Myb transcription factor	IPR015495	-	-
Sma3	SANT/Myb domain	IPR001005	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A5JYE9

Fln msg: Distance to subject end: 58 aas, your sequence is shorter than subject: 139 - 257

Fln protein: RPDLKRGNFSEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLNRGLDPQSHRPLGQPHNSNTICPSVPALEHEILAFQRPRTPEIADFFQYERSESSPMEPATSKDAEEHPDLNLDLCISLPVHS

Protein Length: 140

Fln nts: TGCGTCCTGATCTGAAGCGTGGAAACTTCTCAGAAGAAGAAGACGAACTCATCATCAAACTCCACTCCCTACTCGGCAACAAGTGGTCTCTTATTGCAGGCAGATTGCCTGGGCGGACGGACAACGAGATAAAGAACTACTGGAATACTCACATCAAGAGAAAATTGCTAAACAGGGGACTCGACCCCCAGTCTCATCGCCCCCTCGGCCAGCCGCACAACAGCAACACTATCTGCCCCTCTGTGCCCGCCCTCGAGCACGAAATTCTGGCGTTCCAGAGGCCAAGAACGCCGGAGATAGCAGATTTCTTTCAATACGAACGCTCTGAAAGCTCGCCGATGGAACCGGCCACTTCTAAAGACGCGGAAGAGCATCCCGACCTCAATCTTGATTTGTGCATCAGCTTGCCAGTTCATTCG

Fln Alignment:

biogeco2_mira_rep_c19363___RPDLKRGNFSEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLNRGLDPQSHRPLGQPHNSNTICPSVPALEHEILAFQRPRTPEIADFFQYERSESSPMEPATSKDAEEHPDLNLDLCISLPVHS
A5JYE9__________________RPDLKRGNFSEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLNKGLDPQSHRPLGQVHSSNTTCSSLPAPEHEILAFQSPRTPEIADFFQYERSESSPIEPAASKD-EEYPDLNLELCISLPVHS

SSRs (tot: 1)

Start position	End position	Sequence	Length
377	388	TCT TCT TCT TCT	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain