SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene18993

Length: 414 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene18993
TCGAAGTGATTGTGGGAGTTGGGAATGACGAGCTCCAGAAGATCGCATCCGATGAGGCTGCAGCAAACGGGTGGGTCAACGACAACATTCGCCAATTCTATCCGGCCACCAACATCAAATACATCGCAGTCGGCAACGAAGTTTTGGCGATAGAAAATCGGCAGCATCTTCCCTATCTCGTTGCTGCGATGAGAAACATTCAAACCGCAGTGCGGGGTGCCAATCTGCAGAACTCTATCAAGGTTTCCACCACCCACGCCACGTCTGTTCTCGGAAAATCGTATCCTCCTTCTCAAGGAGAATTCGCTGATGAATTGAAGAGCAGCATGAACGATGTACTCAACTTTCTGGCGGAGAATGAGTCTACTTTCATGGCTAATGTGTATCCCTACTTTAGTTACAATTACAACAAAG

Ace file of the UniGene biog2_v2.0_unigene18993 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22840	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Pollen allergen CJP38 n=1 Tax=Cryptomeria japonica RepID=Q588B8_CRYJA	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	62%
Blast2go	beta- -glucanase	-	-	72%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Glycoside hydrolase, family 17	IPR000490	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	X8	IPR012946	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NZD0

Fln msg: Distance to subject end: 133 aas, your sequence is shorter than subject: 137 - 342

Fln protein: EVIVGVGNDELQKIASDEAAANGWVNDNIRQFYPATNIKYIAVGNEVLAIENRQHLPYLVAAMRNIQTAVRGANLQNSIKVSTTHATSVLGKSYPPSQGEFADELKSSMNDVLNFLAENESTFMANVYPYFSYNYNK

Protein Length: 138

Fln nts: TCGAAGTGATTGTGGGAGTTGGGAATGACGAGCTCCAGAAGATCGCATCCGATGAGGCTGCAGCAAACGGGTGGGTCAACGACAACATTCGCCAATTCTATCCGGCCACCAACATCAAATACATCGCAGTCGGCAACGAAGTTTTGGCGATAGAAAATCGGCAGCATCTTCCCTATCTCGTTGCTGCGATGAGAAACATTCAAACCGCAGTGCGGGGTGCCAATCTGCAGAACTCTATCAAGGTTTCCACCACCCACGCCACGTCTGTTCTCGGAAAATCGTATCCTCCTTCTCAAGGAGAATTCGCTGATGAATTGAAGAGCAGCATGAACGATGTACTCAACTTTCTGGCGGAGAATGAGTCTACTTTCATGGCTAATGTGTATCCCTACTTTAGTTACAATTACAACAAAG

Fln Alignment:

biogeco2_mira_c19320___EVIVGVGNDELQKIASDEAAANGWVNDNIRQFYPATNIKYIAVGNEVLAIENRQHLPYLVAAMRNIQTAVRGANLQNSIKVSTTHAT-SVLGKSYPPSQGEFADELKSSMNDVLNFLAENESTFMANVYPYFSYNYN
A9NZD0__________________DVIVGIETNILQKISSSQAEANSWINENIRPFYPATNIKYIAVGNEV--FKSKENIPYLVPAMKNIQAALKIANLQNNIKVSTTHASESVIGNSFPPSKGVFTDDVKSTMTSVLQFLSDNGAPFMANVYPFFSYVNN

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
119	33	33		33	0.997752

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain