SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene18989

Length: 529 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene18989
CTCAACTGTGGATACATTGAAACAGCATTATCTTTTCGTTCCTGCTAAGCATAAGGATTGCTATCTTGTGTTCTTTTAAATGAGATGTCTGGAAGTACTACAATGGATGGCACTCGCACATGTGAGTCTACAAGGCGTATTGCTTTGATTCTTCGAAATCTTGGACTTGAGGCCATTCCTATAAGTGGGCAGATGAGTCAGCCAAAAGGATAGGAGCTCTAAACAAGTTCAAAGCTGGAGAGCGTAACATCCTTATCTGCACTGATGTTGCTAGCAGAGGGCTAGATATTCCTTCTGTAGATATGGTTATCAACTATGATATACCTACAAACTCAAAGGATTATATTCACAGAGTGGGAAGAACAGCACGTGCTGGTCGGTCAGGTCTCGCAGTGTCTTTAGTCACTCAATATGATGTTGAGCTATACCAGCGTATAGAACAATTGATAGGTAAGAAACTCACTACATTTCCAGCCGAGCAAGAAGAGGTTTTACAACTATATGAACGAGTTAATGAGGCCCAAAGAAT

Ace file of the UniGene biog2_v2.0_unigene18989 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3012	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	pfam00270, DEAD, DEAD/DEAH box helicase	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	42%
Blast2go	protein	-	-	86%

Source	GOs	Term	Type	Identity
Blast2go	ATP-dependent helicase activity	GO:0008026	Molecular Function	86%
Blast2go	RNA binding	GO:0003723	Molecular Function	86%
Blast2go	ATP binding	GO:0005524	Molecular Function	86%
Blast2go	nucleolus	GO:0005730	Cellular Component	86%

Source	InterPros	Term	Type	Identity
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3		IPR014021	-	-
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	RNA helicase, DEAD-box type, Q motif	IPR014014	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A7Y4

Fln msg: Unexpected stop codon in the beginning of your sequence, STOP codon was not found. Distance to subject end: 11 aas, your sequence is shorter than subject: 175 - 259

Fln protein: QLWIH*NSIIFSFLLSIRIAILCSFK*DVWKYYNGWHSHM*VYKAYCFDSSKSWT*GHSYKWADESAKRIGALNKFKAGERNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRSGLAVSLVTQYDVELYQRIEQLIGKKLTTFPAEQEEVLQLYERVNEAQR

Protein Length: 176

Fln nts: CTCAACTGTGGATACATTGAAACAGCATTATCTTTTCGTTCCTGCTAAGCATAAGGATTGCTATCTTGTGTTCTTTTAAATGAGATGTCTGGAAGTACTACAATGGATGGCACTCGCACATGTGAGTCTACAAGGCGTATTGCTTTGATTCTTCGAAATCTTGGACTTGAGGCCATTCCTATAAGTGGGCAGATGAGTCAGCCAAAAGGATAGGAGCTCTAAACAAGTTCAAAGCTGGAGAGCGTAACATCCTTATCTGCACTGATGTTGCTAGCAGAGGGCTAGATATTCCTTCTGTAGATATGGTTATCAACTATGATATACCTACAAACTCAAAGGATTATATTCACAGAGTGGGAAGAACAGCACGTGCTGGTCGGTCAGGTCTCGCAGTGTCTTTAGTCACTCAATATGATGTTGAGCTATACCAGCGTATAGAACAATTGATAGGTAAGAAACTCACTACATTTCCAGCCGAGCAAGAAGAGGTTTTACAACTATATGAACGAGTTAATGAGGCCCAAAGAAT

Fln Alignment:

biogeco2_mira_rep_c19314___ALNKFKAGERNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRSGLAVSLVTQYDVELYQRIEQLIGKKLTTFPAE
D5A7Y4__________________SLEGFRNKRYNILVATDVAGRGIDIPDVAHVINFDMPSNIEMYTHRIGRTGRAGKTGVATTFLTHHDSDVFYDLKQMLIQSNSPVPPE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain