SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene18988

Length: 437 nt

UniGene Fasta

>biog2_v2.0_unigene18988
TTCAAGATATCTGCAGTAAAAGCATCGCCGGATTATCTAGTTGAAAAGTTGAAATCTGAGGATTTAGACAAGCTACTGGAATCCAAAAGAACGACACCCGTAGTGGTGGACTTTTATGCAACATGGTGCGGTCCTTGTATTTTGCTTGCACAACAGTTGGAGATGCTTGCTGTGGAATATGGACCAGCTGTACAATTTGTCAAGATAGATACCGATGAAGAGTATGCACTAGCCCAACAACTGCAGATCCGTGGACTTCCCACTATGGTCTTTATCAGTCCAGATTCTCAAAAGCCTGCAATTCGAACTGAAGGCCTTCTTCCTAATGAAACAATCAAAACTATAATTGAGACTGAACTGTGACAACATCAGTTATATGAAGTCCAAGGTCAATTTAGATCAAACATATAGAGATTATAACGTGTCATTTGATTTTC

Ace file of the UniGene biog2_v2.0_unigene18988

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene24037	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative thioredoxin [Solanum lycopersicum]	-	-	2.0e-26	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	36%
Blast2go	protein	-	-	5.46815e-33	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	Protein-disulfide reductase.	EC:1.8.1.8	-	5.46815e-33	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	cell redox homeostasis	GO:0045454	Biological Process	5.46815e-33	78%
Blast2go	plastid organization	GO:0009657	Biological Process	5.46815e-33	78%
Blast2go	protein-disulfide reductase activity	GO:0047134	Molecular Function	5.46815e-33	78%
Blast2go	protein disulfide oxidoreductase activity	GO:0015035	Molecular Function	5.46815e-33	78%
Blast2go	nucleoid	GO:0009295	Cellular Component	5.46815e-33	78%
Blast2go	chloroplast	GO:0009507	Cellular Component	5.46815e-33	78%
Blast2go	thylakoid	GO:0009579	Cellular Component	5.46815e-33	78%

Source	InterPros	Term	Type	Identity
Sma3		IPR006662	-	-
Sma3		IPR012335	-	-
Sma3	Thioredoxin domain	IPR013766	-	-
Sma3		IPR015467	-	-
Sma3		IPR017936	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NRF7

Fln msg: your sequence is shorter than subject: 121 - 191

Fln protein: FKISAVKASPDYLVEKLKSEDLDKLLESKRTTPVVVDFYATWCGPCILLAQQLEMLAVEYGPAVQFVKIDTDEEYALAQQLQIRGLPTMVFISPDSQKPAIRTEGLLPNETIKTIIETEL*

Protein Length: 122

Fln nts: TTCAAGATATCTGCAGTAAAAGCATCGCCGGATTATCTAGTTGAAAAGTTGAAATCTGAGGATTTAGACAAGCTACTGGAATCCAAAAGAACGACACCCGTAGTGGTGGACTTTTATGCAACATGGTGCGGTCCTTGTATTTTGCTTGCACAACAGTTGGAGATGCTTGCTGTGGAATATGGACCAGCTGTACAATTTGTCAAGATAGATACCGATGAAGAGTATGCACTAGCCCAACAACTGCAGATCCGTGGACTTCCCACTATGGTCTTTATCAGTCCAGATTCTCAAAAGCCTGCAATTCGAACTGAAGGCCTTCTTCCTAATGAAACAATCAAAACTATAATTGAGACTGAACTGTGA___CAACATCAGTTATATGAAGTCCAAGGTCAATTTAGATCAAACATATAGAGATTATAACGTGTCATTTGATTTTC

Fln Alignment:

biogeco2_mira_rep_c19313___PVVVDFYATWCGPCILLAQQLEMLAVEYGPAVQFVKIDTDEEYALAQQLQIRGLPTMVFISPDSQKPAI
A9NRF7__________________PVLVDFWAPWCGPCRMIAPLIDELAKQYAGKIMCLKLNTDESPNIATEYGIRSIPTVMVFKNGEKKDTV

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
129		66		33	0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain