SustainPineDB

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Assembly info
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene18944

Length: 348 nt

UniGene Fasta

>biog2_v2.0_unigene18944
ATGGGGGCCACCATCATCTCAATGCCATGGAGGTGGAGAAAACTTAACACCCCAGTTGGAATCCATTAACAATGGAGAAACTAGCTTGCTCAAAAGACAAGCTACTTTAAGTATTCCAAAAAATACACACAGCAAAACAGCTGTCAATCACAAGCGCAAAAAGTTACCTGTTAAATTCTCAAGCATCCAAAAGCCTATAGACTTCAGTGGGCAGGGTGAATGTTTAGCTGAAGCTATTCAGTCAAACTCCCGAAGCCTGTCTCCACAACATAGATGTGATTCTAGAATCTTAAATCTATCAGGTATGCAAAGAGACAGGATTATCCAAGAGGGGAACAAATCAACGAT

Ace file of the UniGene biog2_v2.0_unigene18944

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene945	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RWP-RK domain-containing protein [Arabidopsis thaliana] ref\|NP_001030895.1\| RWP-RK domain-containing protein [Arabidopsis thaliana] sp\|Q9M1B0.1\|NLP9_ARATH RecName: Full=Protein NLP9; Short=AtNLP9; AltName: Full=NIN-like protein 9; AltName: Full=Nodule inc	-	-	9.0e-30	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Blast2go	protein	-	-	0.0	69%

Source	InterPros	Term	Type	Identity
Sma3	Phox/Bem1p	IPR000270	-	-
Sma3	Zinc finger, TRAF-type	IPR001293	-	-
Sma3	GAF domain	IPR003018	-	-
Sma3	Plant regulator RWP-RK	IPR003035	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A7X9

Fln msg: Distance to subject end: 94 aas, your sequence is shorter than subject: 115 - 753

Fln protein: WGPPSSQCHGGGENLTPQLESINNGETSLLKRQATLSIPKNTHSKTAVNHKRKKLPVKFSSIQKPIDFSGQGECLAEAIQSNSRSLSPQHRCDSRILNLSGMQRDRIIQEGNKST

Protein Length: 116

Fln nts: ATGGGGGCCACCATCATCTCAATGCCATGGAGGTGGAGAAAACTTAACACCCCAGTTGGAATCCATTAACAATGGAGAAACTAGCTTGCTCAAAAGACAAGCTACTTTAAGTATTCCAAAAAATACACACAGCAAAACAGCTGTCAATCACAAGCGCAAAAAGTTACCTGTTAAATTCTCAAGCATCCAAAAGCCTATAGACTTCAGTGGGCAGGGTGAATGTTTAGCTGAAGCTATTCAGTCAAACTCCCGAAGCCTGTCTCCACAACATAGATGTGATTCTAGAATCTTAAATCTATCAGGTATGCAAAGAGACAGGATTATCCAAGAGGGGAACAAATCAACGAT

Fln Alignment:

biogeco2_mira_rep_c19243___PPSSQCHGGGENLTPQLESINNGETSLLKRQATLSIPKNTHSKTAVNHKRKKLPVKFSSIQKPIDFSGQGECLAEAIQSNSRSLSPQHRCDSRILNLSGMQRDRIIQEGNKST
D5A7X9__________________PPASQCHGGGENLMSQLEFINNGETSLHKRQATSSILKNTHSETAVNCKRKKLPVESSSDQKPTDFSGQGECLAEAIQSNSRNLSPQHRCDSRILNLAGLQRDRIIQEGNKST

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain