SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene18929

Length: 377 nt

UniGene Fasta

>biog2_v2.0_unigene18929
ATGGGAGTTGAAGTGCAGTGTCAGGGTACAGTTCCAACTGTTTCTGTTGATAATACAGCCGGTTGTCATCTATACTTAAGCAGGAGTTCAATAGGAGCATCTATAACAACAGCTAAGTCAAGTGAAGTTAATGTACTAGTCCCGGATGCAACAGATAATTCTGACATGTTGGAGTACGCATTACCTGAACAGTTCATACATACCTACAAGGATGGGCAGTTTATAACCTGCCCCGTCCTGCACTCAGTTGGCTGAATGACTTAAGCACCTTCACTCATTCACCCATTTAAAGAATATGTGACGTTTAGATGTACAATTATTTGAGCATTTTGAGCCTTGTATTATGTTTGTTTCTGACCTTGTCTCTAGTATCATTA

Ace file of the UniGene biog2_v2.0_unigene18929

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9066	3/4
SustainPine v2.0	sp_v2.0_unigene62625	1/4

Source	Descriptions	Term	Type	Identity
AutoFact	Adenylyl cyclase-associated protein n=1 Tax=Populus trichocarpa RepID=B9H0Q2_POPTR	-	-	76%
FL-Next	sp=Adenylyl cyclase-associated protein; subsp. trichocarpa).	-	-	71%
Blast2go	adenylyl cyclase associated protein	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	actin cytoskeleton organization	GO:0030036	Biological Process	85%
Blast2go	unidimensional cell growth	GO:0009826	Biological Process	85%
Blast2go	actin binding	GO:0003779	Molecular Function	85%

Source	InterPros	Term	Type	Identity
Sma3	Adenylate cyclase-associated CAP	IPR001837	-	-
Sma3	CARP motif	IPR006599	-	-
Sma3	Adenylate cyclase-associated CAP, C-terminal	IPR013912	-	-
Sma3	Adenylate cyclase-associated CAP, N-terminal	IPR013992	-	-
Sma3	Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal	IPR016098	-	-
Sma3	C-CAP/cofactor C-like domain	IPR017901	-	-
Sma3	CAP, conserved site	IPR018106	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: B9H0Q2

Fln msg: your sequence is shorter than subject: 85 - 466

Fln protein: MGVEVQCQGTVPTVSVDNTAGCHLYLSRSSIGASITTAKSSEVNVLVPDATDNSDMLEYALPEQFIHTYKDGQFITCPVLHSVG*

Protein Length: 86

Fln nts: ATGGGAGTTGAAGTGCAGTGTCAGGGTACAGTTCCAACTGTTTCTGTTGATAATACAGCCGGTTGTCATCTATACTTAAGCAGGAGTTCAATAGGAGCATCTATAACAACAGCTAAGTCAAGTGAAGTTAATGTACTAGTCCCGGATGCAACAGATAATTCTGACATGTTGGAGTACGCATTACCTGAACAGTTCATACATACCTACAAGGATGGGCAGTTTATAACCTGCCCCGTCCTGCACTCAGTTGGCTGA___ATGACTTAAGCACCTTCACTCATTCACCCATTTAAAGAATATGTGACGTTTAGATGTACAATTATTTGAGCATTTTGAGCCTTGTATTATGTTTGTTTCTGACCTTGTCTCTAGTATCATTA

Fln Alignment:

biogeco2_mira_rep_c19213___GVEVQCQGTVPTVSVDNTAGCHLYLSRSSIGASITTAKSSEVNVLVPDATDNSDMLEYALPEQFIHTYKDGQFITCPVLHSVG
B9H0Q2__________________GVEVQCQGSAPTISVDNTGGCQLYLSKGSLGASITTAKSSEINILVPGAEPDGDLVEHALPQQFIHTFKDGQFETTPVSHSGG

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
63	25			75	0.996481
66			25	75	0.996479
67		75	25		0.996478
144	33		66		0.997452
175		50		50	1.0
231		66		33	0.997457

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain