SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene18918

Length: 525 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene18918
CGTTAGGTTTCTGCTATTCTATCTCTCTGTGTTGGGCGTGGGCGATTAACCTCGCTTATCGATTCATTCGGCCGGGCGATCTGTGCCAGTTTCAGTACGAAAGCAACAGGGGTGTTCAGTGCAAAGTGAGGATTAGCGATGAAGCCATTGTACTGTGGAAACATAGAGTACGAGGCTCGGCAGTCAGAAATTGAGCGTTTATTTGGCAAATATGGCAGAGTCGAAAGGGTCGATATGAAATCAGGTTATGCTTTCATCTACATGGAAGATGAGCAAGATGCCGAGGATGCAATACGAGGGCTTGATGATTCAAAATTTGGCAGGCAACGGCGTCGGCTAAGCGTGGAGTGGAAGAAGCCTGCTGATCGAGGTTTCCGCCGATCTGAGGATGGAAGAAGGTCTGTTACAGGTTTGAAGCCAACGAAGACATTATTTGTGATTAACTTTGACTCATACAACACCAAAGCTAGGGACCTTGAAAGGCATTTGAGCCTTATGGCAAAGTGCTAAATGTGAGAATTAGAA

Ace file of the UniGene biog2_v2.0_unigene18918 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15645	1/5
SustainPine v2.0	sp_v2.0_unigene20873	4/5

Source	Descriptions	Term	Type	Identity
AutoFact	Splicing factor-like protein n=3 Tax=Vitis RepID=Q6R4Q7_VITRI	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	83%
Blast2go	arginine serine-rich-splicing factor rsp41	-	-	67%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	67%
Blast2go	nuclear speck	GO:0016607	Cellular Component	0.0	67%

Source	InterPros	Term	Type	e value	Identity
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	0.0	-
Sma3	RNA recognition motif domain	IPR000504	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NTP2

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 160 aas, your sequence is shorter than subject: 124 - 289

Fln protein: MKPLYCGNIEYEARQSEIERLFGKYGRVERVDMKSGYAFIYMEDEQDAEDAIRGLDDSKFGRQRRRLSVEWKKPADRGFRRSEDGRRSVTGLKPTKTLFVINFDSYNTKARDLERHLSLMAKC*

Protein Length: 125

Fln nts: CGTTAGGTTTCTGCTATTCTATCTCTCTGTGTTGGGCGTGGGCGATTAACCTCGCTTATCGATTCATTCGGCCGGGCGATCTGTGCCAGTTTCAGTACGAAAGCAACAGGGGTGTTCAGTGCAAAGTGAGGATTAGCG_-_ATGAAGCCATTGTACTGTGGAAACATAGAGTACGAGGCTCGGCAGTCAGAAATTGAGCGTTTATTTGGCAAATATGGCAGAGTCGAAAGGGTCGATATGAAATCAGGTTATGCTTTCATCTACATGGAAGATGAGCAAGATGCCGAGGATGCAATACGAGGGCTTGATGATTCAAAATTTGGCAGGCAACGGCGTCGGCTAAGCGTGGAGTGGAAGAAGCCTGCTGATCGAGGTTTCCGCCGATCTGAGGATGGAAGAAGGTCTGTTACAGGTTTGAAGCCAACGAAGACATTATTTGTGATTAACTTTGACTCATACAACACCAAAGCTAGGGACCTTGAAAGGCATTTGAGCCTTATGGCAAAGTGCTAAATGTGAGAATTAGAA

Fln Alignment:

biogeco2_mira_rep_c19193___MKPLYCGNIEYEARQSEIERLFGKYGRVERVDMKSGYAFIYMEDEQDAEDAIRGLDDSKFGRQRRRLSVEWKKPADRGFRRSEDGRRSVTGLKPTKTLFVINFDSYNTKARDLERHLSLMAK
A9NTP2__________________MKPLYCGNIEYEVRQSEIERLFGKYGRVERVDMKSGYAFVYMEDERDAEDAIRALDKTEFGRQRRRLTVEWTKHAERGLRRSEDGRRSVTGLKPTKTLFVINFDPYDTRARDLERHFEPYGK

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
184		80		20	0.995493
244		25		75	0.996473
299	66		33		0.997454
301		66		33	0.997454

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain