SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene18848

Length: 511 nt

UniGene Fasta

>biog2_v2.0_unigene18848
TGCTCACCACCATACCCACTGTAGATGTTCATGTGATTTGGTATGGTAGATTCAGCCCTGTCCAGCGTTCCATTGTGGCGGATTTTGTGCGGTCGTTGGAAGCCAGTAAAGCCATGGAGCCCTCTGTTTACAGTTGGTGGAAAACCACTGAGAGATACAGTGGTGCCTCCAACAAGGCCCCTGCCATGGCAAACACAAGGCTGGGCAGGCAGATGTTGGACGATGGCTATTCCCTAGGCAAGTCACTGAACCGGAGCCACATTGCCGCTCTGGTAGAGAGAGCCATTGCTACCAGAGCAGTGCCAGAGAATGGCAATGCCGTGTATTTGGTTCTCACGTCCGATGACGTTACTGTGGAGGGCTTCTGTATGAGTTGTGGATTTCATGCTCATCTCTTGGCCGCCAAGAAGCTTCTTCTGCCATATGCCTGGGTTGGGAACTCCGAAACTCAATGTCCAGGGCAGTGCGCGTGGCCCTTTCATCAGCCCCTGTACGGCCCCCAAACTCCTCC

Ace file of the UniGene biog2_v2.0_unigene18848

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene81742	3/5
SustainPine v2.0	sp_v2.0_unigene82848	2/5

Source	Descriptions	Term	Type	Identity
AutoFact	protein EXORDIUM like 2 [Arabidopsis thaliana] gb\|AAG41473.1\|AF326891_1 putative phi-1 protein [Arabidopsis thaliana] gb\|AAK00390.1\|AF339708_1 putative phi-1 protein [Arabidopsis thaliana] gb\|AAK55719.1\|AF380638_1 AT5g64260/MSJ1_10 [Arabidopsis thaliana]	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	phosphate-induced protein	-	-	74%

Source	InterPros	Term	Type	e value	Identity
Sma3	Phosphate-induced protein 1	IPR006766	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NLQ8

Fln msg: Distance to subject end: 101 aas, your sequence is shorter than subject: 169 - 320

Fln protein: LTTIPTVDVHVIWYGRFSPVQRSIVADFVRSLEASKAMEPSVYSWWKTTERYSGASNKAPAMANTRLGRQMLDDGYSLGKSLNRSHIAALVERAIATRAVPENGNAVYLVLTSDDVTVEGFCMSCGFHAHLLAAKKLLLPYAWVGNSETQCPGQCAWPFHQPLYGPQTP

Protein Length: 170

Fln nts: TGCTCACCACCATACCCACTGTAGATGTTCATGTGATTTGGTATGGTAGATTCAGCCCTGTCCAGCGTTCCATTGTGGCGGATTTTGTGCGGTCGTTGGAAGCCAGTAAAGCCATGGAGCCCTCTGTTTACAGTTGGTGGAAAACCACTGAGAGATACAGTGGTGCCTCCAACAAGGCCCCTGCCATGGCAAACACAAGGCTGGGCAGGCAGATGTTGGACGATGGCTATTCCCTAGGCAAGTCACTGAACCGGAGCCACATTGCCGCTCTGGTAGAGAGAGCCATTGCTACCAGAGCAGTGCCAGAGAATGGCAATGCCGTGTATTTGGTTCTCACGTCCGATGACGTTACTGTGGAGGGCTTCTGTATGAGTTGTGGATTTCATGCTCATCTCTTGGCCGCCAAGAAGCTTCTTCTGCCATATGCCTGGGTTGGGAACTCCGAAACTCAATGTCCAGGGCAGTGCGCGTGGCCCTTTCATCAGCCCCTGTACGGCCCCCAAACTCCTCC

Fln Alignment:

biogeco2_mira_rep_c19056___LTTIPTVDVHVIWYGRFSPVQRSIVADFVRSLEASKAMEPSVYSWWKTTERYSGASNKAPAMANTRLGRQMLDDGYSLGKSLNRSHIAALVERAIATRAVPENGNAVYLVLTSDDVTVEGFCMSCGFXXXXXXXXXXXXPYAWVGNSETQCPGQCAWPFHQPLYGPQTP
A9NLQ8__________________LTTIPTVDVHLIWYGRFSPAQRSIVGDFVQSLEASKATEPSVYSWWKTTERYSGASNNAAAMANTRLGKQKLDDGYSLGKSLKRSQIAALVERAIASRAVPENSNAVYLVLTSDDVTVEGFCMSCGFHGDLMPRKKVPLPYAWVGNSETQCPGQCAWPFHQPIYGPQTP

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
170		80		20	0.995493
254	40		60		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain