SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene18841

Length: 244 nt

UniGene Fasta

>biog2_v2.0_unigene18841
GCGCAACAGGGGAAGCGGATATGTCAGAGTCTCTTGGTGCAAAGCAGGAATTGAGAATGGCAGCTCCCATTGAAGTCAGTTATATCACGGCTCCTGAGCTGCTCAATCTCTGCAAATCCCCAAATGTAGCCATCATCGATGTCAGGGATGAGGAGAGAAGTCTGGATGCTCACATAGCAGGCTCCTTTCATTATGCAAGCGACACGTTCTTCGAAAAAATTCCAGATCTCTTGCAGAACATGGA

Ace file of the UniGene biog2_v2.0_unigene18841

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9380	5/5

Source	Descriptions	Term	Type	e value	Identity
AutoFact	rhodanese-like protein [Holcus lanatus]	-	-	1.0e-39	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Blast2go	dual specificity phosphatase cdc25	-	-	0.0	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	Protein-tyrosine-phosphatase.	EC:3.1.3.48	-	0.0	77%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	77%
Blast2go	response to arsenic-containing substance	GO:0046685	Biological Process	77%
Blast2go	peptidyl-tyrosine dephosphorylation	GO:0035335	Biological Process	77%
Blast2go	protein tyrosine phosphatase activity	GO:0004725	Molecular Function	77%
Blast2go	arsenate reductase activity	GO:0030611	Molecular Function	77%
Blast2go	chloroplast	GO:0009507	Cellular Component	77%
Blast2go	mitochondrion	GO:0005739	Cellular Component	77%

Source	InterPros	Term	Type	e value	Identity
Sma3	Rhodanese-like	IPR001763	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAX3

Fln msg: Distance to subject end: 71 aas, your sequence is shorter than subject: 74 - 134

Fln protein: MSESLGAKQELRMAAPIEVSYITAPELLNLCKSPNVAIIDVRDEERSLDAHIAGSFHYASDTFFEKIPDLLQNM

Protein Length: 75

Fln nts: GCGCAACAGGGGAAGCGGAT_-_ATGTCAGAGTCTCTTGGTGCAAAGCAGGAATTGAGAATGGCAGCTCCCATTGAAGTCAGTTATATCACGGCTCCTGAGCTGCTCAATCTCTGCAAATCCCCAAATGTAGCCATCATCGATGTCAGGGATGAGGAGAGAAGTCTGGATGCTCACATAGCAGGCTCCTTTCATTATGCAAGCGACACGTTCTTCGAAAAAATTCCAGATCTCTTGCAGAACATGGA

Fln Alignment:

biogeco2_mira_rep_c19044___MAAPIEVSYITAPELLNLCKSPNVAIIDVRDEERSLDAHIAGSFHYASDTFFEKIPDLLQNM
D5AAX3__________________MAASIEVSYITAPELLNLRKSPNVAIIDVRDEERSLDGHIAGSFHYASDTFCEKIPDLLQNM

SNPs (tot: 5)

Position	C %	G %	T %	Probability
25		40	60	1.0
26	60	40		1.0
108	50		50	1.0
131	66		33	0.997452
150	33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain