SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene18836

Length: 439 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene18836
AGGGGGGGAGATCTCCCTGCTGTGAGAAGGCTCATACTAACAAAGGGGCCTGGACTAAACAAGAAGATGACCGCCTTATCGCTCACATTCGAGCCCACGGCGAAGGGGGCTGGCGTTCTCTTCCCAAAGCCGCAGGGCTGCTGAGATGCGGCAAGAGCTGCAGACTGCGATGGATAAACTACCTGCGTCCCGATCTGAAGCGTGGAAGCTTCACGGAAGAAGAAGACGAGCTCATCATCAAACTTCACTCCTTTGTTGGCAACAAGTGGTCTTTAATTGCAGGAAGATTGCCCGGACGGACGGACAACGAGATAAAGAACTACTGGAACACACACATCAAAAGAAAATTGCTGAGCAAGGGACTCGACCCCCAGACCCATCAAAACTTCCTATCACTGTCATAGGCTAGAACAGAGAAACTGAATCCTGTTCTAAGTTT

Ace file of the UniGene biog2_v2.0_unigene18836 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7666	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	R2R3-MYB transcription factor MYB5 n=1 Tax=Picea glauca RepID=A5JYE9_PICGL	-	-	76%
FL-Next	tr=R2R3-MYB transcription factor MYB5; Picea glauca (White spruce) (Pinus glauca).	-	-	92%
Blast2go	myb-like protein	-	-	87%

Source	GOs	Term	Type	e value	Identity
Blast2go	DNA binding	GO:0003677	Molecular Function	0.0	87%
Blast2go	nucleus	GO:0005634	Cellular Component	0.0	87%

Source	InterPros	Term	Type	Identity
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	Peptidase C48, SUMO/Sentrin/Ubl1	IPR003653	-	-
Sma3	Transposon, En/Spm-like	IPR004242	-	-
Sma3		IPR012287	-	-
Sma3		IPR014778	-	-
Sma3	Myb transcription factor	IPR015495	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A5JYE9

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 111 aas, atg_distance in limit (1-15): atg_distance = 1, W2: There is no M at the beginning, your sequence is shorter than subject: 134 - 257

Fln protein: GGRSPCCEKAHTNKGAWTKQEDDRLIAHIRAHGEGGWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGSFTEEEDELIIKLHSFVGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLSKGLDPQTHQNFLSLS*

Protein Length: 135

Fln nts: AGGGGGGGAGATCTCCCTGCTGTGAGAAGGCTCATACTAACAAAGGGGCCTGGACTAAACAAGAAGATGACCGCCTTATCGCTCACATTCGAGCCCACGGCGAAGGGGGCTGGCGTTCTCTTCCCAAAGCCGCAGGGCTGCTGAGATGCGGCAAGAGCTGCAGACTGCGATGGATAAACTACCTGCGTCCCGATCTGAAGCGTGGAAGCTTCACGGAAGAAGAAGACGAGCTCATCATCAAACTTCACTCCTTTGTTGGCAACAAGTGGTCTTTAATTGCAGGAAGATTGCCCGGACGGACGGACAACGAGATAAAGAACTACTGGAACACACACATCAAAAGAAAATTGCTGAGCAAGGGACTCGACCCCCAGACCCATCAAAACTTCCTATCACTGTCATAGGCTAGAACAGAGAAACTGAATCCTGTTCTAAGTTT

Fln Alignment:

biogeco2_mira_c19032___GRSPCCEKAHTNKGAWTKQEDDRLIAHIRAHGEGGWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGSFTEEEDELIIKLHSFVGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLSKGLDPQTHQ
A5JYE9__________________GRSPCCEKAHTNKGAWTKEEDDRLIAHIRAHGEGCWRSLPKAAGLMRCGKSCRLRWINYLRPDLKRGNFSEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLNKGLDPQSHR

SSRs (tot: 1)

Start position	End position	Sequence	Length
135	147	GTCC GTCC GTCC G	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain