SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene18832

Length: 426 nt

UniGene Fasta

>biog2_v2.0_unigene18832
ATTGTCGTAGAGTTTATCAAGAATGAAGATTACAAATATGTTCGAATCCTTGGAGCTTTGTATTTGCGCCTTGTTGGTAAACCAACTGATGTTTATCAATATTTGGAACCTTTATACAATGACTATCGAAAGCTACGACGTATGCTTGCAGATGGAAGTTTTGGATTGAGTCATGTGGATGAGTTTATTGATGAACTTTTGACGACTGATTATGCATGTGATGTTGCTTTGCCACGCGTGCCTAAAAGGTGGACTCTTGAAGCAACTGATCAGTTGGAGCCAAGGAGGAGTGCTTTGGAAGATGATTTTGAGGAGGAAGAAGAAAAAGAAGAGGAAGACCAAACACTGGTTGGCTTGGATTCACTTGCTTTAGATAAGGATCATCGTCGTGGTAGGAGTTCTCCAAGGGAGAGAGATAGAGATGCT

Ace file of the UniGene biog2_v2.0_unigene18832

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9484	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	pre-mRNA processing factor [Triticum aestivum]	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	pre-mrna-splicing factor 38a	-	-	89%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin thiolesterase.	EC:3.1.2.15	-	0.0	89%

Source	GOs	Term	Type	Identity
Blast2go	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	89%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	89%
Blast2go	ubiquitin thiolesterase activity	GO:0004221	Molecular Function	89%

Source	InterPros	Term	Type	e value	Identity
Sma3	Pre-mRNA-splicing factor 38	IPR005037	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLN1

Fln msg: Distance to subject end: 173 aas, your sequence is shorter than subject: 142 - 400

Fln protein: IVVEFIKNEDYKYVRILGALYLRLVGKPTDVYQYLEPLYNDYRKLRRMLADGSFGLSHVDEFIDELLTTDYACDVALPRVPKRWTLEATDQLEPRRSALEDDFEEEEEKEEEDQTLVGLDSLALDKDHRRGRSSPRERDRDA

Protein Length: 143

Fln nts: ATTGTCGTAGAGTTTATCAAGAATGAAGATTACAAATATGTTCGAATCCTTGGAGCTTTGTATTTGCGCCTTGTTGGTAAACCAACTGATGTTTATCAATATTTGGAACCTTTATACAATGACTATCGAAAGCTACGACGTATGCTTGCAGATGGAAGTTTTGGATTGAGTCATGTGGATGAGTTTATTGATGAACTTTTGACGACTGATTATGCATGTGATGTTGCTTTGCCACGCGTGCCTAAAAGGTGGACTCTTGAAGCAACTGATCAGTTGGAGCCAAGGAGGAGTGCTTTGGAAGATGATTTTGAGGAGGAAGAAGAAAAAGAAGAGGAAGACCAAACACTGGTTGGCTTGGATTCACTTGCTTTAGATAAGGATCATCGTCGTGGTAGGAGTTCTCCAAGGGAGAGAGATAGAGATGCT

Fln Alignment:

biogeco2_mira_rep_c19019___IVVEFIKNEDYKYVRILGALYLRLVGKPTDVYQYLEPLYNDYRKLRRMLADGSFGLSHVDEFIDELLTTDYACDVALPRVPKRWTLEATDQLEPRRSALXXXXXXXXXXXXXXQTLVGLDSLALDKDH
B8LLN1__________________IVVEFIKNEDYKYVRILGALYLRLVGKPTDVYQYLEPLYNDYRKLRRKLADGSFALSHVDEFIDELLTTDYACDVALPRVPKRWTLEASGQLEPRRSALEDDFEEEEEKEEEDQTLIGLGSLALDKDH

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
269	75		25		0.996473
295		25		75	0.996473
333	25		75		0.996473
339		75		25	0.996473
402			33	66	0.997452
405	66		33		0.997453

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain