SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene18789

Length: 570 nt

UniGene Fasta

>biog2_v2.0_unigene18789
ATCAGAAAGGAACGAGGGTTTAATTTTACAGTTTTGAAGTCGTTGTCTGAGCTTGATCGTGTTGGATTTCTGTAACTGTGAAGGGGGATACCAGCAATCGCAGTGTTCAAAGCGAGGAAACATCAGGTTGCAAGATGAAGCTTGACTTGAGTGGCCTTGAGCCTGCAACCCTCCATCAACAGTCAGATGATAACCTCTATGATGTCTTATCTCCAAGTCCATCATTCAAGATTCCTAATGATACAGATTTTGATGGCTTCCAAAAGGCAGCATTGCAAATGGTGAAACCAGCAAAGGGAACAACAACTCTTGCATTTATATTCAAGGAGGGAATTATGGTTGCTGCCGATTCTCGTGCCAGCATGGGAGGATACATTTCATCACAATCTGTGAAGAAAATTATTGAAATCAATCCTTACTTACTTGGTACAATGGCTGGGGGTGCAGCTGATTGCCAATTCTGGCACAGAAACCTGGGCATTAAGTGTCGGTTGCACGAGCTGGCAAACAAGCGGAGAATATCAGTGACAGGTGCATCTAAATTGTTAGCTAATATCCTGTACTCATACC

Ace file of the UniGene biog2_v2.0_unigene18789

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18349	1/6
SustainPine v2.0	sp_v2.0_unigene61634	5/6

Source	Descriptions	Term	Type	Identity
AutoFact	Proteasome subunit beta type n=2 Tax=Picea sitchensis RepID=A9NYS4_PICSI	-	-	97%
FL-Next	sp=Proteasome subunit beta type; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	proteasome subunit beta type-5-a	-	-	88%

Source	GOs	Term	Type	Identity
Blast2go	response to cadmium ion	GO:0046686	Biological Process	88%
Blast2go	hydrolase activity	GO:0016787	Molecular Function	88%
Blast2go	proteasome complex	GO:0000502	Cellular Component	88%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase T1A, proteasome beta-subunit	IPR000243	-	-
Sma3	Proteasome, subunit alpha/beta	IPR001353	-	-
Sma3	Proteasome, beta-type subunit, conserved site	IPR016050	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NYS4

Fln msg: Distance to subject end: 126 aas, your sequence is shorter than subject: 145 - 271

Fln protein: MKLDLSGLEPATLHQQSDDNLYDVLSPSPSFKIPNDTDFDGFQKAALQMVKPAKGTTTLAFIFKEGIMVAADSRASMGGYISSQSVKKIIEINPYLLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSY

Protein Length: 146

Fln nts: ATCAGAAAGGAACGAGGGTTTAATTTTACAGTTTTGAAGTCGTTGTCTGAGCTTGATCGTGTTGGATTTCTGTAACTGTGAAGGGGGATACCAGCAATCGCAGTGTTCAAAGCGAGGAAACATCAGGTTGCAAG_-_ATGAAGCTTGACTTGAGTGGCCTTGAGCCTGCAACCCTCCATCAACAGTCAGATGATAACCTCTATGATGTCTTATCTCCAAGTCCATCATTCAAGATTCCTAATGATACAGATTTTGATGGCTTCCAAAAGGCAGCATTGCAAATGGTGAAACCAGCAAAGGGAACAACAACTCTTGCATTTATATTCAAGGAGGGAATTATGGTTGCTGCCGATTCTCGTGCCAGCATGGGAGGATACATTTCATCACAATCTGTGAAGAAAATTATTGAAATCAATCCTTACTTACTTGGTACAATGGCTGGGGGTGCAGCTGATTGCCAATTCTGGCACAGAAACCTGGGCATTAAGTGTCGGTTGCACGAGCTGGCAAACAAGCGGAGAATATCAGTGACAGGTGCATCTAAATTGTTAGCTAATATCCTGTACTCATACC

Fln Alignment:

biogeco2_mira_rep_c18919___MKLDLSGLEPATLHQQSDDNLYDVLSPSPSFKIPNDTDFDGFQKAALQMVKPAKGTTTLAFIFKEGIMVAADSRASMGGYISSQSVKKIIEINPYLLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSY
A9NYS4__________________MKLDLSGLEPATLHQRSDDNLCDVFSPSPSFKIPNDTDFDGFQKAALQMVKPAKGTTTLAFIFKEGIMVAADSRASMGGYISSQSVKKIIEINPHLLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain