SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene18738

Length: 559 nt

UniGene Fasta

>biog2_v2.0_unigene18738
ATGGGGAGGTACACATATGCAAGAGAAACGCATTACCTTTGAAAAACAGATTTCATAACAATGGAGGGTTGTGGAGAAGATGGGCAAGTGAAGCTGTTAGGTCTGATTCACAGTCCCTTCGTGGTGCGGGTACGCATAGCACTCGCTGTTAAAGGGATCCATTATGAGTTCATTGAAGAGGACATCATCCACAACAGCAAGAGCGAGCTGCTACTGCAATCAAACCCTGTTCACAAGAAGATTCCGGTGCTCATCCACAACGGCAAGCCTGTTTGTGAATCCATGATTATTGTGCAATACATTGAGGAGGCGTGGGGCAATAAGGCTCCCAATCTTATGCCCGAAGATCCATATGACCGAGCCAATGCTCGCTTCTGGGCTGCCTTTGTAGACGATAAGCTCTTTCCCTGTCTGCGAGGAGTTTTCACTGGCCAAGGCGAGCAGCTACAGAAAGCAGTAGAAGATAGTGTTACAAACTTTCTGTTGATAGAGGAAGCCCTGCGAACCAACCAGTGCTTCGCAGGAAAAGCGTATTTTGGAGGGGATCAGATCGGCTTGA

Ace file of the UniGene biog2_v2.0_unigene18738

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6203	2/4
SustainPine v2.0	sp_v2.0_unigene15371	1/4
SustainPine v2.0	sp_v2.0_unigene30293	1/4

Source	Descriptions	Term	Type	Identity
AutoFact	Probable glutathione S-transferase n=1 Tax=Picea mariana RepID=O65056_PICMA	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	80%
Blast2go	tau class glutathione s-transferase	-	-	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	transferase activity	GO:0016740	Molecular Function	0.0	71%

Source	InterPros	Term	Type	Identity
Sma3	Lipocalin	IPR002345	-	-
Sma3	Glutathione S-transferase, N-terminal	IPR004045	-	-
Sma3	Glutathione S-transferase, C-terminal	IPR004046	-	-
Sma3	Glutathione S-transferase, omega-class	IPR005442	-	-
Sma3	Glutathione S-transferase, C-terminal-like	IPR010987	-	-
Sma3		IPR012335	-	-
Sma3	Glutathione S-transferase/chloride channel, C-terminal	IPR017933	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P2I2

Fln msg: Distance to subject end: 73 aas, your sequence is shorter than subject: 166 - 239

Fln protein: MEGCGEDGQVKLLGLIHSPFVVRVRIALAVKGIHYEFIEEDIIHNSKSELLLQSNPVHKKIPVLIHNGKPVCESMIIVQYIEEAWGNKAPNLMPEDPYDRANARFWAAFVDDKLFPCLRGVFTGQGEQLQKAVEDSVTNFLLIEEALRTNQCFAGKAYFGGDQIGL

Protein Length: 167

Fln nts: ATGGGGAGGTACACATATGCAAGAGAAACGCATTACCTTTGAAAAACAGATTTCATAACA_-_ATGGAGGGTTGTGGAGAAGATGGGCAAGTGAAGCTGTTAGGTCTGATTCACAGTCCCTTCGTGGTGCGGGTACGCATAGCACTCGCTGTTAAAGGGATCCATTATGAGTTCATTGAAGAGGACATCATCCACAACAGCAAGAGCGAGCTGCTACTGCAATCAAACCCTGTTCACAAGAAGATTCCGGTGCTCATCCACAACGGCAAGCCTGTTTGTGAATCCATGATTATTGTGCAATACATTGAGGAGGCGTGGGGCAATAAGGCTCCCAATCTTATGCCCGAAGATCCATATGACCGAGCCAATGCTCGCTTCTGGGCTGCCTTTGTAGACGATAAGCTCTTTCCCTGTCTGCGAGGAGTTTTCACTGGCCAAGGCGAGCAGCTACAGAAAGCAGTAGAAGATAGTGTTACAAACTTTCTGTTGATAGAGGAAGCCCTGCGAACCAACCAGTGCTTCGCAGGAAAAGCGTATTTTGGAGGGGATCAGATCGGCTTGA

Fln Alignment:

biogeco2_mira_rep_c18781___ITMEGCGEDGQVKLLGLIHSPFVVRVRIALAVKGIHYEFIEEDIIHNSKSELLLQSNPVHKKIPVLIHNGKPVCESMIIVQYIEEAWGNKAPNLMPEDPYDRANARFWAAFVDDKLFPCLRGVFTGQGEQLQKAVEDSVTNFLLIEEALRTNQCFAGKAYFGGDQIG
A9P2I2__________________MAMEACGEEGQVKLLGASISPFVLRVRIALALKGIHYEFIEENLLN--KSQLLLQSNPVHKKIPVLIHNGKPVCESMIIVQYIEEAWDSKAPNLMPKDPYDRAIARFWAAFVDDKLLPCVRGVFTGQGEQQQKAVEESVANFLVLEEALRTSLCFSGKPYFGGDEIG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain